miRNA display CGI


Results 1 - 20 of 145 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29015 3' -61.8 NC_006146.1 + 1126 0.67 0.668909
Target:  5'- gUCUUCUCCacgcgCCGGUGCCCccgcgaggguccccGGGCCgccccgGGg -3'
miRNA:   3'- -GGGAGAGGa----GGUCGCGGG--------------CCUGGa-----CC- -5'
29015 3' -61.8 NC_006146.1 + 1316 0.69 0.547283
Target:  5'- cCCCUCaggCC-CCAcccgacgcGCGCUCGGGCCccgGGg -3'
miRNA:   3'- -GGGAGa--GGaGGU--------CGCGGGCCUGGa--CC- -5'
29015 3' -61.8 NC_006146.1 + 2058 0.67 0.668909
Target:  5'- gUCUUCUCCacgcgCCGGUGCCCccgcgaggguccccGGGCCgccccgGGg -3'
miRNA:   3'- -GGGAGAGGa----GGUCGCGGG--------------CCUGGa-----CC- -5'
29015 3' -61.8 NC_006146.1 + 2248 0.69 0.547283
Target:  5'- cCCCUCaggCC-CCAcccgacgcGCGCUCGGGCCccgGGg -3'
miRNA:   3'- -GGGAGa--GGaGGU--------CGCGGGCCUGGa--CC- -5'
29015 3' -61.8 NC_006146.1 + 2991 0.67 0.649688
Target:  5'- gUCUCUCCacgcgCCGGUGCCCccgcgaggguccccGGGCCgccccgGGg -3'
miRNA:   3'- gGGAGAGGa----GGUCGCGGG--------------CCUGGa-----CC- -5'
29015 3' -61.8 NC_006146.1 + 3180 0.69 0.547283
Target:  5'- cCCCUCaggCC-CCAcccgacgcGCGCUCGGGCCccgGGg -3'
miRNA:   3'- -GGGAGa--GGaGGU--------CGCGGGCCUGGa--CC- -5'
29015 3' -61.8 NC_006146.1 + 4255 0.69 0.547283
Target:  5'- uCCCggCUCgCUCUGGCGUCCGcGGCCa-- -3'
miRNA:   3'- -GGGa-GAG-GAGGUCGCGGGC-CUGGacc -5'
29015 3' -61.8 NC_006146.1 + 4560 0.72 0.394888
Target:  5'- aCCUC-CC-CCAGCuauucaccgagcaCCCGGGCCUGGu -3'
miRNA:   3'- gGGAGaGGaGGUCGc------------GGGCCUGGACC- -5'
29015 3' -61.8 NC_006146.1 + 5164 0.66 0.72477
Target:  5'- gCCCUgcugaagUUCCUggCCAG-GCCCgagacguuuucccuGGGCCUGGg -3'
miRNA:   3'- -GGGA-------GAGGA--GGUCgCGGG--------------CCUGGACC- -5'
29015 3' -61.8 NC_006146.1 + 5346 0.66 0.709799
Target:  5'- aCCCUgUCCUCucauuucugCAGCGCUCGcugUCUGGu -3'
miRNA:   3'- -GGGAgAGGAG---------GUCGCGGGCcu-GGACC- -5'
29015 3' -61.8 NC_006146.1 + 12006 0.68 0.594816
Target:  5'- -gCUCgcugaCUCCGGUGCCCGaGACC-GGc -3'
miRNA:   3'- ggGAGag---GAGGUCGCGGGC-CUGGaCC- -5'
29015 3' -61.8 NC_006146.1 + 12832 0.68 0.585238
Target:  5'- -----cCCUCCGGCGgCCGGACCcgaGGa -3'
miRNA:   3'- gggagaGGAGGUCGCgGGCCUGGa--CC- -5'
29015 3' -61.8 NC_006146.1 + 13076 0.78 0.175142
Target:  5'- uCCC-CUCCggggCCAGCGCggaggaguacUCGGACCUGGc -3'
miRNA:   3'- -GGGaGAGGa---GGUCGCG----------GGCCUGGACC- -5'
29015 3' -61.8 NC_006146.1 + 13290 0.71 0.456553
Target:  5'- cCCCUCggguccgCCUCCAgGCGUCCu--CCUGGu -3'
miRNA:   3'- -GGGAGa------GGAGGU-CGCGGGccuGGACC- -5'
29015 3' -61.8 NC_006146.1 + 13936 0.66 0.719176
Target:  5'- cCUCUCUcCCUCCccgaGGC-CCCGGcuCCUGa -3'
miRNA:   3'- -GGGAGA-GGAGG----UCGcGGGCCu-GGACc -5'
29015 3' -61.8 NC_006146.1 + 14930 0.67 0.671785
Target:  5'- uCCCUCgcccaucgCCUugcCCuGCGCCCgGGGCCa-- -3'
miRNA:   3'- -GGGAGa-------GGA---GGuCGCGGG-CCUGGacc -5'
29015 3' -61.8 NC_006146.1 + 15911 0.68 0.585238
Target:  5'- -----cCCUCCGGCGgCCGGACCcgaGGa -3'
miRNA:   3'- gggagaGGAGGUCGCgGGCCUGGa--CC- -5'
29015 3' -61.8 NC_006146.1 + 16368 0.71 0.456553
Target:  5'- cCCCUCggguccgCCUCCAgGCGUCCu--CCUGGu -3'
miRNA:   3'- -GGGAGa------GGAGGU-CGCGGGccuGGACC- -5'
29015 3' -61.8 NC_006146.1 + 17013 0.66 0.719176
Target:  5'- cCUCUCUcCCUCCccgaGGC-CCCGGcuCCUGa -3'
miRNA:   3'- -GGGAGA-GGAGG----UCGcGGGCCu-GGACc -5'
29015 3' -61.8 NC_006146.1 + 18007 0.67 0.671785
Target:  5'- uCCCUCgcccaucgCCUugcCCuGCGCCCgGGGCCa-- -3'
miRNA:   3'- -GGGAGa-------GGA---GGuCGCGGG-CCUGGacc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.