miRNA display CGI


Results 1 - 20 of 145 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29015 3' -61.8 NC_006146.1 + 54630 0.71 0.422557
Target:  5'- gCCUCUCUggUCCGGUGgcucCCCGGGCaUUGGa -3'
miRNA:   3'- gGGAGAGG--AGGUCGC----GGGCCUG-GACC- -5'
29015 3' -61.8 NC_006146.1 + 47857 1.12 0.000726
Target:  5'- aCCCUCUCCUCCAGCGCCCGGACCUGGg -3'
miRNA:   3'- -GGGAGAGGAGGUCGCGGGCCUGGACC- -5'
29015 3' -61.8 NC_006146.1 + 121124 0.81 0.10003
Target:  5'- gCCC-CUCCUgagacacaucagCCGGCGUCUGGGCCUGGg -3'
miRNA:   3'- -GGGaGAGGA------------GGUCGCGGGCCUGGACC- -5'
29015 3' -61.8 NC_006146.1 + 156057 0.73 0.34464
Target:  5'- cCCCUCggCCUCCcGCGgcCCCGGGCCcGa -3'
miRNA:   3'- -GGGAGa-GGAGGuCGC--GGGCCUGGaCc -5'
29015 3' -61.8 NC_006146.1 + 128029 0.72 0.37762
Target:  5'- cCCCUUcgCCUCCcaccaguggaaccuGCGCgUGGGCCUGGc -3'
miRNA:   3'- -GGGAGa-GGAGGu-------------CGCGgGCCUGGACC- -5'
29015 3' -61.8 NC_006146.1 + 137703 0.79 0.148095
Target:  5'- cCCCUCcggCCUCCccccggGGUGCCCGGGCCUa- -3'
miRNA:   3'- -GGGAGa--GGAGG------UCGCGGGCCUGGAcc -5'
29015 3' -61.8 NC_006146.1 + 33525 0.75 0.259618
Target:  5'- gCCUC-CCUCCcuagguuGUGCCCGGcuuGCCUGGc -3'
miRNA:   3'- gGGAGaGGAGGu------CGCGGGCC---UGGACC- -5'
29015 3' -61.8 NC_006146.1 + 117534 0.74 0.309738
Target:  5'- gCCUCUCCcUCGGgGCCUGGGCCg-- -3'
miRNA:   3'- gGGAGAGGaGGUCgCGGGCCUGGacc -5'
29015 3' -61.8 NC_006146.1 + 154534 0.71 0.421727
Target:  5'- gCCCUCUguguguuUCUCCuGCGUgCCGGACgaGGg -3'
miRNA:   3'- -GGGAGA-------GGAGGuCGCG-GGCCUGgaCC- -5'
29015 3' -61.8 NC_006146.1 + 13290 0.71 0.456553
Target:  5'- cCCCUCggguccgCCUCCAgGCGUCCu--CCUGGu -3'
miRNA:   3'- -GGGAGa------GGAGGU-CGCGGGccuGGACC- -5'
29015 3' -61.8 NC_006146.1 + 159876 0.66 0.746877
Target:  5'- uCCCuggUCUCCUCgCAGaggGCCuCGaGGCCgGGg -3'
miRNA:   3'- -GGG---AGAGGAG-GUCg--CGG-GC-CUGGaCC- -5'
29015 3' -61.8 NC_006146.1 + 106201 0.77 0.192506
Target:  5'- uCCCgggcCUCCUgCCAGgGCCUGGuguCCUGGg -3'
miRNA:   3'- -GGGa---GAGGA-GGUCgCGGGCCu--GGACC- -5'
29015 3' -61.8 NC_006146.1 + 156892 0.78 0.175142
Target:  5'- gCCCUCcgCCuUCCAGCaccaGCCCGGccgagGCCUGGg -3'
miRNA:   3'- -GGGAGa-GG-AGGUCG----CGGGCC-----UGGACC- -5'
29015 3' -61.8 NC_006146.1 + 33878 0.72 0.398082
Target:  5'- aCCCggcCUCCUCCccgggguGUGCCCGGccuacccccguCCUGGa -3'
miRNA:   3'- -GGGa--GAGGAGGu------CGCGGGCCu----------GGACC- -5'
29015 3' -61.8 NC_006146.1 + 107065 0.71 0.414298
Target:  5'- uUCUCauUCC-CCGGCGCCaCGGcaagACCUGGa -3'
miRNA:   3'- gGGAG--AGGaGGUCGCGG-GCC----UGGACC- -5'
29015 3' -61.8 NC_006146.1 + 126785 0.76 0.226525
Target:  5'- cCCCcCUCCUCgCcgGGCaGCCgGGGCCUGGa -3'
miRNA:   3'- -GGGaGAGGAG-G--UCG-CGGgCCUGGACC- -5'
29015 3' -61.8 NC_006146.1 + 157336 0.71 0.439367
Target:  5'- cCCCgg-CCUgcuugcgcagcCCGGCGCCCGGcGCCUGc -3'
miRNA:   3'- -GGGagaGGA-----------GGUCGCGGGCC-UGGACc -5'
29015 3' -61.8 NC_006146.1 + 16368 0.71 0.456553
Target:  5'- cCCCUCggguccgCCUCCAgGCGUCCu--CCUGGu -3'
miRNA:   3'- -GGGAGa------GGAGGU-CGCGGGccuGGACC- -5'
29015 3' -61.8 NC_006146.1 + 146821 0.74 0.296551
Target:  5'- uCCCaggCgaggCCgcgCCAGCguagaGCCCGGGCCUGGc -3'
miRNA:   3'- -GGGa--Ga---GGa--GGUCG-----CGGGCCUGGACC- -5'
29015 3' -61.8 NC_006146.1 + 4560 0.72 0.394888
Target:  5'- aCCUC-CC-CCAGCuauucaccgagcaCCCGGGCCUGGu -3'
miRNA:   3'- gGGAGaGGaGGUCGc------------GGGCCUGGACC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.