miRNA display CGI


Results 1 - 20 of 145 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29015 3' -61.8 NC_006146.1 + 60364 0.66 0.693729
Target:  5'- gCCUCUuugaacaggaggUCUCCgaggugcAGCGCCUGGAgaacaucugcacccuCCUGGa -3'
miRNA:   3'- gGGAGA------------GGAGG-------UCGCGGGCCU---------------GGACC- -5'
29015 3' -61.8 NC_006146.1 + 126212 0.66 0.689928
Target:  5'- uCCCUCaucgUCCUCCucuccGgGCCCGGagucacuGCCgGGc -3'
miRNA:   3'- -GGGAG----AGGAGGu----CgCGGGCC-------UGGaCC- -5'
29015 3' -61.8 NC_006146.1 + 41659 0.66 0.700364
Target:  5'- aCCCUCgcgCCUCaccuGgGCCCGucCCUGc -3'
miRNA:   3'- -GGGAGa--GGAGgu--CgCGGGCcuGGACc -5'
29015 3' -61.8 NC_006146.1 + 159876 0.66 0.746877
Target:  5'- uCCCuggUCUCCUCgCAGaggGCCuCGaGGCCgGGg -3'
miRNA:   3'- -GGG---AGAGGAG-GUCg--CGG-GC-CUGGaCC- -5'
29015 3' -61.8 NC_006146.1 + 56395 0.66 0.690879
Target:  5'- gCCCU-UCUUCCAGUgGCaCgGGACCgGGa -3'
miRNA:   3'- -GGGAgAGGAGGUCG-CG-GgCCUGGaCC- -5'
29015 3' -61.8 NC_006146.1 + 142065 0.66 0.690879
Target:  5'- aCCCgggCUgccggggucCCUCCGGCugGCCUGGgACCcGGg -3'
miRNA:   3'- -GGGa--GA---------GGAGGUCG--CGGGCC-UGGaCC- -5'
29015 3' -61.8 NC_006146.1 + 145143 0.66 0.690879
Target:  5'- aCCCgggCUgccggggucCCUCCGGCugGCCUGGgACCcGGg -3'
miRNA:   3'- -GGGa--GA---------GGAGGUCG--CGGGCC-UGGaCC- -5'
29015 3' -61.8 NC_006146.1 + 148221 0.66 0.690879
Target:  5'- aCCCgggCUgccggggucCCUCCGGCugGCCUGGgACCcGGg -3'
miRNA:   3'- -GGGa--GA---------GGAGGUCG--CGGGCC-UGGaCC- -5'
29015 3' -61.8 NC_006146.1 + 151299 0.66 0.690879
Target:  5'- aCCCgggCUgccggggucCCUCCGGCugGCCUGGgACCcGGg -3'
miRNA:   3'- -GGGa--GA---------GGAGGUCG--CGGGCC-UGGaCC- -5'
29015 3' -61.8 NC_006146.1 + 154377 0.66 0.690879
Target:  5'- aCCCgggCUgccggggucCCUCCGGCugGCCUGGgACCcGGg -3'
miRNA:   3'- -GGGa--GA---------GGAGGUCG--CGGGCC-UGGaCC- -5'
29015 3' -61.8 NC_006146.1 + 157455 0.66 0.690879
Target:  5'- aCCCgggCUgccggggucCCUCCGGCugGCCUGGgACCcGGg -3'
miRNA:   3'- -GGGa--GA---------GGAGGUCG--CGGGCC-UGGaCC- -5'
29015 3' -61.8 NC_006146.1 + 75696 0.66 0.746877
Target:  5'- gCCUC-CCuggaggagcUgCAGCGCagGGACCUGGc -3'
miRNA:   3'- gGGAGaGG---------AgGUCGCGggCCUGGACC- -5'
29015 3' -61.8 NC_006146.1 + 102766 0.66 0.698471
Target:  5'- cCCCUUUCCUgCguggcguGGCGCCgcucccgCGGACCggcUGGc -3'
miRNA:   3'- -GGGAGAGGAgG-------UCGCGG-------GCCUGG---ACC- -5'
29015 3' -61.8 NC_006146.1 + 119035 0.66 0.700364
Target:  5'- cCCCUCuucauccccaUCC-CCGG-GCUCGGGCCaGGc -3'
miRNA:   3'- -GGGAG----------AGGaGGUCgCGGGCCUGGaCC- -5'
29015 3' -61.8 NC_006146.1 + 5346 0.66 0.709799
Target:  5'- aCCCUgUCCUCucauuucugCAGCGCUCGcugUCUGGu -3'
miRNA:   3'- -GGGAgAGGAG---------GUCGCGGGCcu-GGACC- -5'
29015 3' -61.8 NC_006146.1 + 168011 0.66 0.719176
Target:  5'- gCCCUCUCCUCCucuaagaguGGUGUCgaCGGuCC-GGu -3'
miRNA:   3'- -GGGAGAGGAGG---------UCGCGG--GCCuGGaCC- -5'
29015 3' -61.8 NC_006146.1 + 60718 0.66 0.719176
Target:  5'- gCCgcaUCUCCaaCCGGCGCUgaGGcCCUGGa -3'
miRNA:   3'- -GGg--AGAGGa-GGUCGCGGg-CCuGGACC- -5'
29015 3' -61.8 NC_006146.1 + 124118 0.66 0.728486
Target:  5'- gCCCUCgcgCCggccggCCAGCcauccGCCCGGGgUcGGg -3'
miRNA:   3'- -GGGAGa--GGa-----GGUCG-----CGGGCCUgGaCC- -5'
29015 3' -61.8 NC_006146.1 + 44107 0.66 0.728486
Target:  5'- aCCUCcaggCC-CCGGCuGCCCGG-CgaGGa -3'
miRNA:   3'- gGGAGa---GGaGGUCG-CGGGCCuGgaCC- -5'
29015 3' -61.8 NC_006146.1 + 142711 0.66 0.73496
Target:  5'- aCCCgUCUCUgUCCacuagaggggaccgGGUGUUgGGACCUGGu -3'
miRNA:   3'- -GGG-AGAGG-AGG--------------UCGCGGgCCUGGACC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.