miRNA display CGI


Results 1 - 20 of 145 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29015 3' -61.8 NC_006146.1 + 169927 0.66 0.718241
Target:  5'- cCCCUCUCCgaaaucaCCAgaaagugggcacuGUGCCaGGGCCUucGGg -3'
miRNA:   3'- -GGGAGAGGa------GGU-------------CGCGGgCCUGGA--CC- -5'
29015 3' -61.8 NC_006146.1 + 168995 0.66 0.718241
Target:  5'- cCCCUCUCCgaaaucaCCAgaaagugggcacuGUGCCaGGGCCUucGGg -3'
miRNA:   3'- -GGGAGAGGa------GGU-------------CGCGGgCCUGGA--CC- -5'
29015 3' -61.8 NC_006146.1 + 168063 0.66 0.718241
Target:  5'- cCCCUCUCCgaaaucaCCAgaaagugggcacuGUGCCaGGGCCUucGGg -3'
miRNA:   3'- -GGGAGAGGa------GGU-------------CGCGGgCCUGGA--CC- -5'
29015 3' -61.8 NC_006146.1 + 168011 0.66 0.719176
Target:  5'- gCCCUCUCCUCCucuaagaguGGUGUCgaCGGuCC-GGu -3'
miRNA:   3'- -GGGAGAGGAGG---------UCGCGG--GCCuGGaCC- -5'
29015 3' -61.8 NC_006146.1 + 167944 0.68 0.604418
Target:  5'- aCCUCgcggUgUCCAGCGCCUGGugUc-- -3'
miRNA:   3'- gGGAGa---GgAGGUCGCGGGCCugGacc -5'
29015 3' -61.8 NC_006146.1 + 165702 0.7 0.462652
Target:  5'- cCCCUagCUCCcCCAG-GCCCagggaaaacgucucGGGCCUGGc -3'
miRNA:   3'- -GGGA--GAGGaGGUCgCGGG--------------CCUGGACC- -5'
29015 3' -61.8 NC_006146.1 + 164918 0.67 0.642946
Target:  5'- uCCUUCUCCUCCAuuGCcaccaucaguuGCuuGGAUCgGGu -3'
miRNA:   3'- -GGGAGAGGAGGU--CG-----------CGggCCUGGaCC- -5'
29015 3' -61.8 NC_006146.1 + 162477 0.68 0.614038
Target:  5'- -gCUCUCCUgguccCCAGgGUCCGGACUa-- -3'
miRNA:   3'- ggGAGAGGA-----GGUCgCGGGCCUGGacc -5'
29015 3' -61.8 NC_006146.1 + 162380 0.66 0.700364
Target:  5'- cCCCUUggCgcgCCcGCGCCCGGgACCccggUGGg -3'
miRNA:   3'- -GGGAGagGa--GGuCGCGGGCC-UGG----ACC- -5'
29015 3' -61.8 NC_006146.1 + 159876 0.66 0.746877
Target:  5'- uCCCuggUCUCCUCgCAGaggGCCuCGaGGCCgGGg -3'
miRNA:   3'- -GGG---AGAGGAG-GUCg--CGG-GC-CUGGaCC- -5'
29015 3' -61.8 NC_006146.1 + 157771 0.68 0.585238
Target:  5'- -gCUCUCCUCguGgGCCCGGgaGCCc-- -3'
miRNA:   3'- ggGAGAGGAGguCgCGGGCC--UGGacc -5'
29015 3' -61.8 NC_006146.1 + 157455 0.66 0.690879
Target:  5'- aCCCgggCUgccggggucCCUCCGGCugGCCUGGgACCcGGg -3'
miRNA:   3'- -GGGa--GA---------GGAGGUCG--CGGGCC-UGGaCC- -5'
29015 3' -61.8 NC_006146.1 + 157336 0.71 0.439367
Target:  5'- cCCCgg-CCUgcuugcgcagcCCGGCGCCCGGcGCCUGc -3'
miRNA:   3'- -GGGagaGGA-----------GGUCGCGGGCC-UGGACc -5'
29015 3' -61.8 NC_006146.1 + 156892 0.78 0.175142
Target:  5'- gCCCUCcgCCuUCCAGCaccaGCCCGGccgagGCCUGGg -3'
miRNA:   3'- -GGGAGa-GG-AGGUCG----CGGGCC-----UGGACC- -5'
29015 3' -61.8 NC_006146.1 + 156711 0.66 0.736802
Target:  5'- gCCUCcCCgUCCAG-GCuCCGGggguccaGCCUGGc -3'
miRNA:   3'- gGGAGaGG-AGGUCgCG-GGCC-------UGGACC- -5'
29015 3' -61.8 NC_006146.1 + 156360 0.69 0.519333
Target:  5'- gCCCagCagCUCCAGgGCCCGGuCCaGGc -3'
miRNA:   3'- -GGGa-GagGAGGUCgCGGGCCuGGaCC- -5'
29015 3' -61.8 NC_006146.1 + 156057 0.73 0.34464
Target:  5'- cCCCUCggCCUCCcGCGgcCCCGGGCCcGa -3'
miRNA:   3'- -GGGAGa-GGAGGuCGC--GGGCCUGGaCc -5'
29015 3' -61.8 NC_006146.1 + 155854 0.75 0.253268
Target:  5'- uCCaCUUaCCUCUGGCccgagaccuggggGCCCGGGCCUGGa -3'
miRNA:   3'- -GG-GAGaGGAGGUCG-------------CGGGCCUGGACC- -5'
29015 3' -61.8 NC_006146.1 + 155844 0.69 0.566179
Target:  5'- cCCCgccagugcCUCCUCgCAG-GCCCGGcgggcCCUGGc -3'
miRNA:   3'- -GGGa-------GAGGAG-GUCgCGGGCCu----GGACC- -5'
29015 3' -61.8 NC_006146.1 + 154534 0.71 0.421727
Target:  5'- gCCCUCUguguguuUCUCCuGCGUgCCGGACgaGGg -3'
miRNA:   3'- -GGGAGA-------GGAGGuCGCG-GGCCUGgaCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.