miRNA display CGI


Results 1 - 20 of 62 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29015 5' -56.9 NC_006146.1 + 47891 1.01 0.00882
Target:  5'- cGGCCUCGGUCAGC-GCUCCGAGAAGAa -3'
miRNA:   3'- -CCGGAGCCAGUCGuCGAGGCUCUUCU- -5'
29015 5' -56.9 NC_006146.1 + 54254 0.78 0.288043
Target:  5'- cGGCCcCGGUCAgGCGGgaaacgucCUCCGAGAGGGu -3'
miRNA:   3'- -CCGGaGCCAGU-CGUC--------GAGGCUCUUCU- -5'
29015 5' -56.9 NC_006146.1 + 68191 0.76 0.384443
Target:  5'- aGGacgCGGgcgCAGCGGCUCCGGGAGGu -3'
miRNA:   3'- -CCggaGCCa--GUCGUCGAGGCUCUUCu -5'
29015 5' -56.9 NC_006146.1 + 108901 0.75 0.444505
Target:  5'- cGGCCagCGaGUCAGCAGCgaCCGAGcAGGu -3'
miRNA:   3'- -CCGGa-GC-CAGUCGUCGa-GGCUCuUCU- -5'
29015 5' -56.9 NC_006146.1 + 22189 0.74 0.462612
Target:  5'- uGGCCUUGG--GGUAGCUCUGGGAgucAGAg -3'
miRNA:   3'- -CCGGAGCCagUCGUCGAGGCUCU---UCU- -5'
29015 5' -56.9 NC_006146.1 + 25267 0.74 0.462612
Target:  5'- uGGCCUUGG--GGUAGCUCUGGGAgucAGAg -3'
miRNA:   3'- -CCGGAGCCagUCGUCGAGGCUCU---UCU- -5'
29015 5' -56.9 NC_006146.1 + 28345 0.74 0.462612
Target:  5'- uGGCCUUGG--GGUAGCUCUGGGAgucAGAg -3'
miRNA:   3'- -CCGGAGCCagUCGUCGAGGCUCU---UCU- -5'
29015 5' -56.9 NC_006146.1 + 16033 0.74 0.462612
Target:  5'- uGGCCUUGG--GGUAGCUCUGGGAgucAGAg -3'
miRNA:   3'- -CCGGAGCCagUCGUCGAGGCUCU---UCU- -5'
29015 5' -56.9 NC_006146.1 + 19111 0.74 0.462612
Target:  5'- uGGCCUUGG--GGUAGCUCUGGGAgucAGAg -3'
miRNA:   3'- -CCGGAGCCagUCGUCGAGGCUCU---UCU- -5'
29015 5' -56.9 NC_006146.1 + 104974 0.73 0.528784
Target:  5'- aGGCCUgGGgcucccgaGGgGGCUCUGGGGAGAc -3'
miRNA:   3'- -CCGGAgCCag------UCgUCGAGGCUCUUCU- -5'
29015 5' -56.9 NC_006146.1 + 67731 0.73 0.537559
Target:  5'- aGGCCUCGGUCc---GCUCCGcccagacGGAGGAg -3'
miRNA:   3'- -CCGGAGCCAGucguCGAGGC-------UCUUCU- -5'
29015 5' -56.9 NC_006146.1 + 46716 0.73 0.548352
Target:  5'- cGGCCg----CGGCGGCUCCGAGgcGGg -3'
miRNA:   3'- -CCGGagccaGUCGUCGAGGCUCuuCU- -5'
29015 5' -56.9 NC_006146.1 + 54719 0.71 0.618267
Target:  5'- gGGCC-CgGGUCAG-GGCggCCGAGggGAg -3'
miRNA:   3'- -CCGGaG-CCAGUCgUCGa-GGCUCuuCU- -5'
29015 5' -56.9 NC_006146.1 + 83174 0.71 0.638437
Target:  5'- gGGCCUUgauuucaaGGUgCAGCAGCUggGAGAGGGu -3'
miRNA:   3'- -CCGGAG--------CCA-GUCGUCGAggCUCUUCU- -5'
29015 5' -56.9 NC_006146.1 + 149849 0.71 0.668636
Target:  5'- gGGCCUCGG-CGaagcGCAGCgucucgcccUCCGAGAAu- -3'
miRNA:   3'- -CCGGAGCCaGU----CGUCG---------AGGCUCUUcu -5'
29015 5' -56.9 NC_006146.1 + 117169 0.7 0.718278
Target:  5'- cGCCcCGGcgCAGCcgcGGCUCCcgGAGAGGAc -3'
miRNA:   3'- cCGGaGCCa-GUCG---UCGAGG--CUCUUCU- -5'
29015 5' -56.9 NC_006146.1 + 113702 0.69 0.728026
Target:  5'- cGGCC-CGGggaCGGCGGCggcagCCGGGAcGGu -3'
miRNA:   3'- -CCGGaGCCa--GUCGUCGa----GGCUCUuCU- -5'
29015 5' -56.9 NC_006146.1 + 124577 0.69 0.737694
Target:  5'- cGGCU--GGUCAGaAGCccggCCGAGAGGAa -3'
miRNA:   3'- -CCGGagCCAGUCgUCGa---GGCUCUUCU- -5'
29015 5' -56.9 NC_006146.1 + 42910 0.69 0.737694
Target:  5'- gGGCCUCugucccggcuGUCAGCAGCggcgccaagcUCCG-GAGGAc -3'
miRNA:   3'- -CCGGAGc---------CAGUCGUCG----------AGGCuCUUCU- -5'
29015 5' -56.9 NC_006146.1 + 45725 0.69 0.765195
Target:  5'- aGCCUCGGUUGucuuuccucugauGCuGCUCCGGGGGc- -3'
miRNA:   3'- cCGGAGCCAGU-------------CGuCGAGGCUCUUcu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.