Results 1 - 20 of 62 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
29015 | 5' | -56.9 | NC_006146.1 | + | 47891 | 1.01 | 0.00882 |
Target: 5'- cGGCCUCGGUCAGC-GCUCCGAGAAGAa -3' miRNA: 3'- -CCGGAGCCAGUCGuCGAGGCUCUUCU- -5' |
|||||||
29015 | 5' | -56.9 | NC_006146.1 | + | 54254 | 0.78 | 0.288043 |
Target: 5'- cGGCCcCGGUCAgGCGGgaaacgucCUCCGAGAGGGu -3' miRNA: 3'- -CCGGaGCCAGU-CGUC--------GAGGCUCUUCU- -5' |
|||||||
29015 | 5' | -56.9 | NC_006146.1 | + | 68191 | 0.76 | 0.384443 |
Target: 5'- aGGacgCGGgcgCAGCGGCUCCGGGAGGu -3' miRNA: 3'- -CCggaGCCa--GUCGUCGAGGCUCUUCu -5' |
|||||||
29015 | 5' | -56.9 | NC_006146.1 | + | 108901 | 0.75 | 0.444505 |
Target: 5'- cGGCCagCGaGUCAGCAGCgaCCGAGcAGGu -3' miRNA: 3'- -CCGGa-GC-CAGUCGUCGa-GGCUCuUCU- -5' |
|||||||
29015 | 5' | -56.9 | NC_006146.1 | + | 16033 | 0.74 | 0.462612 |
Target: 5'- uGGCCUUGG--GGUAGCUCUGGGAgucAGAg -3' miRNA: 3'- -CCGGAGCCagUCGUCGAGGCUCU---UCU- -5' |
|||||||
29015 | 5' | -56.9 | NC_006146.1 | + | 28345 | 0.74 | 0.462612 |
Target: 5'- uGGCCUUGG--GGUAGCUCUGGGAgucAGAg -3' miRNA: 3'- -CCGGAGCCagUCGUCGAGGCUCU---UCU- -5' |
|||||||
29015 | 5' | -56.9 | NC_006146.1 | + | 25267 | 0.74 | 0.462612 |
Target: 5'- uGGCCUUGG--GGUAGCUCUGGGAgucAGAg -3' miRNA: 3'- -CCGGAGCCagUCGUCGAGGCUCU---UCU- -5' |
|||||||
29015 | 5' | -56.9 | NC_006146.1 | + | 22189 | 0.74 | 0.462612 |
Target: 5'- uGGCCUUGG--GGUAGCUCUGGGAgucAGAg -3' miRNA: 3'- -CCGGAGCCagUCGUCGAGGCUCU---UCU- -5' |
|||||||
29015 | 5' | -56.9 | NC_006146.1 | + | 19111 | 0.74 | 0.462612 |
Target: 5'- uGGCCUUGG--GGUAGCUCUGGGAgucAGAg -3' miRNA: 3'- -CCGGAGCCagUCGUCGAGGCUCU---UCU- -5' |
|||||||
29015 | 5' | -56.9 | NC_006146.1 | + | 104974 | 0.73 | 0.528784 |
Target: 5'- aGGCCUgGGgcucccgaGGgGGCUCUGGGGAGAc -3' miRNA: 3'- -CCGGAgCCag------UCgUCGAGGCUCUUCU- -5' |
|||||||
29015 | 5' | -56.9 | NC_006146.1 | + | 67731 | 0.73 | 0.537559 |
Target: 5'- aGGCCUCGGUCc---GCUCCGcccagacGGAGGAg -3' miRNA: 3'- -CCGGAGCCAGucguCGAGGC-------UCUUCU- -5' |
|||||||
29015 | 5' | -56.9 | NC_006146.1 | + | 46716 | 0.73 | 0.548352 |
Target: 5'- cGGCCg----CGGCGGCUCCGAGgcGGg -3' miRNA: 3'- -CCGGagccaGUCGUCGAGGCUCuuCU- -5' |
|||||||
29015 | 5' | -56.9 | NC_006146.1 | + | 54719 | 0.71 | 0.618267 |
Target: 5'- gGGCC-CgGGUCAG-GGCggCCGAGggGAg -3' miRNA: 3'- -CCGGaG-CCAGUCgUCGa-GGCUCuuCU- -5' |
|||||||
29015 | 5' | -56.9 | NC_006146.1 | + | 83174 | 0.71 | 0.638437 |
Target: 5'- gGGCCUUgauuucaaGGUgCAGCAGCUggGAGAGGGu -3' miRNA: 3'- -CCGGAG--------CCA-GUCGUCGAggCUCUUCU- -5' |
|||||||
29015 | 5' | -56.9 | NC_006146.1 | + | 149849 | 0.71 | 0.668636 |
Target: 5'- gGGCCUCGG-CGaagcGCAGCgucucgcccUCCGAGAAu- -3' miRNA: 3'- -CCGGAGCCaGU----CGUCG---------AGGCUCUUcu -5' |
|||||||
29015 | 5' | -56.9 | NC_006146.1 | + | 117169 | 0.7 | 0.718278 |
Target: 5'- cGCCcCGGcgCAGCcgcGGCUCCcgGAGAGGAc -3' miRNA: 3'- cCGGaGCCa-GUCG---UCGAGG--CUCUUCU- -5' |
|||||||
29015 | 5' | -56.9 | NC_006146.1 | + | 113702 | 0.69 | 0.728026 |
Target: 5'- cGGCC-CGGggaCGGCGGCggcagCCGGGAcGGu -3' miRNA: 3'- -CCGGaGCCa--GUCGUCGa----GGCUCUuCU- -5' |
|||||||
29015 | 5' | -56.9 | NC_006146.1 | + | 42910 | 0.69 | 0.737694 |
Target: 5'- gGGCCUCugucccggcuGUCAGCAGCggcgccaagcUCCG-GAGGAc -3' miRNA: 3'- -CCGGAGc---------CAGUCGUCG----------AGGCuCUUCU- -5' |
|||||||
29015 | 5' | -56.9 | NC_006146.1 | + | 124577 | 0.69 | 0.737694 |
Target: 5'- cGGCU--GGUCAGaAGCccggCCGAGAGGAa -3' miRNA: 3'- -CCGGagCCAGUCgUCGa---GGCUCUUCU- -5' |
|||||||
29015 | 5' | -56.9 | NC_006146.1 | + | 45725 | 0.69 | 0.765195 |
Target: 5'- aGCCUCGGUUGucuuuccucugauGCuGCUCCGGGGGc- -3' miRNA: 3'- cCGGAGCCAGU-------------CGuCGAGGCUCUUcu -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home