miRNA display CGI


Results 1 - 20 of 62 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29015 5' -56.9 NC_006146.1 + 10227 0.66 0.907461
Target:  5'- cGGCCcUGGUCAuguGcCGGCUCCu-GAAGGc -3'
miRNA:   3'- -CCGGaGCCAGU---C-GUCGAGGcuCUUCU- -5'
29015 5' -56.9 NC_006146.1 + 11540 0.68 0.819639
Target:  5'- aGGCCUUGGccaaUCAGCGGUcCCuaAGggGGg -3'
miRNA:   3'- -CCGGAGCC----AGUCGUCGaGGc-UCuuCU- -5'
29015 5' -56.9 NC_006146.1 + 12956 0.67 0.844271
Target:  5'- uGGCCUUGG--GGUAGCUCUgGAGucaGAGAg -3'
miRNA:   3'- -CCGGAGCCagUCGUCGAGG-CUC---UUCU- -5'
29015 5' -56.9 NC_006146.1 + 13733 0.68 0.811087
Target:  5'- cGGCCggaGGgacccCGGCAGC-CCG-GGAGAg -3'
miRNA:   3'- -CCGGag-CCa----GUCGUCGaGGCuCUUCU- -5'
29015 5' -56.9 NC_006146.1 + 14836 0.67 0.859769
Target:  5'- cGGUCUCGGgcccggGGCcGCgggaggCCGAGggGGc -3'
miRNA:   3'- -CCGGAGCCag----UCGuCGa-----GGCUCuuCU- -5'
29015 5' -56.9 NC_006146.1 + 16033 0.74 0.462612
Target:  5'- uGGCCUUGG--GGUAGCUCUGGGAgucAGAg -3'
miRNA:   3'- -CCGGAGCCagUCGUCGAGGCUCU---UCU- -5'
29015 5' -56.9 NC_006146.1 + 16811 0.68 0.811087
Target:  5'- cGGCCggaGGgacccCGGCAGC-CCG-GGAGAg -3'
miRNA:   3'- -CCGGag-CCa----GUCGUCGaGGCuCUUCU- -5'
29015 5' -56.9 NC_006146.1 + 17765 0.67 0.844271
Target:  5'- aGGCCaCGGUCacacugcgcaagAGCaugagggucccgGGCUCCGAGAGc- -3'
miRNA:   3'- -CCGGaGCCAG------------UCG------------UCGAGGCUCUUcu -5'
29015 5' -56.9 NC_006146.1 + 19111 0.74 0.462612
Target:  5'- uGGCCUUGG--GGUAGCUCUGGGAgucAGAg -3'
miRNA:   3'- -CCGGAGCCagUCGUCGAGGCUCU---UCU- -5'
29015 5' -56.9 NC_006146.1 + 19889 0.68 0.811087
Target:  5'- cGGCCggaGGgacccCGGCAGC-CCG-GGAGAg -3'
miRNA:   3'- -CCGGag-CCa----GUCGUCGaGGCuCUUCU- -5'
29015 5' -56.9 NC_006146.1 + 22189 0.74 0.462612
Target:  5'- uGGCCUUGG--GGUAGCUCUGGGAgucAGAg -3'
miRNA:   3'- -CCGGAGCCagUCGUCGAGGCUCU---UCU- -5'
29015 5' -56.9 NC_006146.1 + 22966 0.68 0.811087
Target:  5'- cGGCCggaGGgacccCGGCAGC-CCG-GGAGAg -3'
miRNA:   3'- -CCGGag-CCa----GUCGUCGaGGCuCUUCU- -5'
29015 5' -56.9 NC_006146.1 + 25267 0.74 0.462612
Target:  5'- uGGCCUUGG--GGUAGCUCUGGGAgucAGAg -3'
miRNA:   3'- -CCGGAGCCagUCGUCGAGGCUCU---UCU- -5'
29015 5' -56.9 NC_006146.1 + 26044 0.68 0.811087
Target:  5'- cGGCCggaGGgacccCGGCAGC-CCG-GGAGAg -3'
miRNA:   3'- -CCGGag-CCa----GUCGUCGaGGCuCUUCU- -5'
29015 5' -56.9 NC_006146.1 + 27788 0.68 0.784518
Target:  5'- gGGUCUCaGGUCAcCGGCUCCaGGAAa- -3'
miRNA:   3'- -CCGGAG-CCAGUcGUCGAGGcUCUUcu -5'
29015 5' -56.9 NC_006146.1 + 28345 0.74 0.462612
Target:  5'- uGGCCUUGG--GGUAGCUCUGGGAgucAGAg -3'
miRNA:   3'- -CCGGAGCCagUCGUCGAGGCUCU---UCU- -5'
29015 5' -56.9 NC_006146.1 + 29122 0.68 0.811087
Target:  5'- cGGCCggaGGgacccCGGCAGC-CCG-GGAGAg -3'
miRNA:   3'- -CCGGag-CCa----GUCGUCGaGGCuCUUCU- -5'
29015 5' -56.9 NC_006146.1 + 31785 0.67 0.844271
Target:  5'- cGCCaUCGG--AGcCAGCUCCGGGAAu- -3'
miRNA:   3'- cCGG-AGCCagUC-GUCGAGGCUCUUcu -5'
29015 5' -56.9 NC_006146.1 + 33201 0.67 0.844271
Target:  5'- gGGCCUcCGGgugCuccuGguGCUCCGGGGc-- -3'
miRNA:   3'- -CCGGA-GCCa--Gu---CguCGAGGCUCUucu -5'
29015 5' -56.9 NC_006146.1 + 33326 0.68 0.819639
Target:  5'- gGGCUcCGGggucCGGguGCUCCGGGGc-- -3'
miRNA:   3'- -CCGGaGCCa---GUCguCGAGGCUCUucu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.