Results 1 - 20 of 62 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29015 | 5' | -56.9 | NC_006146.1 | + | 10227 | 0.66 | 0.907461 |
Target: 5'- cGGCCcUGGUCAuguGcCGGCUCCu-GAAGGc -3' miRNA: 3'- -CCGGaGCCAGU---C-GUCGAGGcuCUUCU- -5' |
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29015 | 5' | -56.9 | NC_006146.1 | + | 11540 | 0.68 | 0.819639 |
Target: 5'- aGGCCUUGGccaaUCAGCGGUcCCuaAGggGGg -3' miRNA: 3'- -CCGGAGCC----AGUCGUCGaGGc-UCuuCU- -5' |
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29015 | 5' | -56.9 | NC_006146.1 | + | 12956 | 0.67 | 0.844271 |
Target: 5'- uGGCCUUGG--GGUAGCUCUgGAGucaGAGAg -3' miRNA: 3'- -CCGGAGCCagUCGUCGAGG-CUC---UUCU- -5' |
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29015 | 5' | -56.9 | NC_006146.1 | + | 13733 | 0.68 | 0.811087 |
Target: 5'- cGGCCggaGGgacccCGGCAGC-CCG-GGAGAg -3' miRNA: 3'- -CCGGag-CCa----GUCGUCGaGGCuCUUCU- -5' |
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29015 | 5' | -56.9 | NC_006146.1 | + | 14836 | 0.67 | 0.859769 |
Target: 5'- cGGUCUCGGgcccggGGCcGCgggaggCCGAGggGGc -3' miRNA: 3'- -CCGGAGCCag----UCGuCGa-----GGCUCuuCU- -5' |
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29015 | 5' | -56.9 | NC_006146.1 | + | 16033 | 0.74 | 0.462612 |
Target: 5'- uGGCCUUGG--GGUAGCUCUGGGAgucAGAg -3' miRNA: 3'- -CCGGAGCCagUCGUCGAGGCUCU---UCU- -5' |
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29015 | 5' | -56.9 | NC_006146.1 | + | 16811 | 0.68 | 0.811087 |
Target: 5'- cGGCCggaGGgacccCGGCAGC-CCG-GGAGAg -3' miRNA: 3'- -CCGGag-CCa----GUCGUCGaGGCuCUUCU- -5' |
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29015 | 5' | -56.9 | NC_006146.1 | + | 17765 | 0.67 | 0.844271 |
Target: 5'- aGGCCaCGGUCacacugcgcaagAGCaugagggucccgGGCUCCGAGAGc- -3' miRNA: 3'- -CCGGaGCCAG------------UCG------------UCGAGGCUCUUcu -5' |
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29015 | 5' | -56.9 | NC_006146.1 | + | 19111 | 0.74 | 0.462612 |
Target: 5'- uGGCCUUGG--GGUAGCUCUGGGAgucAGAg -3' miRNA: 3'- -CCGGAGCCagUCGUCGAGGCUCU---UCU- -5' |
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29015 | 5' | -56.9 | NC_006146.1 | + | 19889 | 0.68 | 0.811087 |
Target: 5'- cGGCCggaGGgacccCGGCAGC-CCG-GGAGAg -3' miRNA: 3'- -CCGGag-CCa----GUCGUCGaGGCuCUUCU- -5' |
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29015 | 5' | -56.9 | NC_006146.1 | + | 22189 | 0.74 | 0.462612 |
Target: 5'- uGGCCUUGG--GGUAGCUCUGGGAgucAGAg -3' miRNA: 3'- -CCGGAGCCagUCGUCGAGGCUCU---UCU- -5' |
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29015 | 5' | -56.9 | NC_006146.1 | + | 22966 | 0.68 | 0.811087 |
Target: 5'- cGGCCggaGGgacccCGGCAGC-CCG-GGAGAg -3' miRNA: 3'- -CCGGag-CCa----GUCGUCGaGGCuCUUCU- -5' |
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29015 | 5' | -56.9 | NC_006146.1 | + | 25267 | 0.74 | 0.462612 |
Target: 5'- uGGCCUUGG--GGUAGCUCUGGGAgucAGAg -3' miRNA: 3'- -CCGGAGCCagUCGUCGAGGCUCU---UCU- -5' |
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29015 | 5' | -56.9 | NC_006146.1 | + | 26044 | 0.68 | 0.811087 |
Target: 5'- cGGCCggaGGgacccCGGCAGC-CCG-GGAGAg -3' miRNA: 3'- -CCGGag-CCa----GUCGUCGaGGCuCUUCU- -5' |
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29015 | 5' | -56.9 | NC_006146.1 | + | 27788 | 0.68 | 0.784518 |
Target: 5'- gGGUCUCaGGUCAcCGGCUCCaGGAAa- -3' miRNA: 3'- -CCGGAG-CCAGUcGUCGAGGcUCUUcu -5' |
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29015 | 5' | -56.9 | NC_006146.1 | + | 28345 | 0.74 | 0.462612 |
Target: 5'- uGGCCUUGG--GGUAGCUCUGGGAgucAGAg -3' miRNA: 3'- -CCGGAGCCagUCGUCGAGGCUCU---UCU- -5' |
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29015 | 5' | -56.9 | NC_006146.1 | + | 29122 | 0.68 | 0.811087 |
Target: 5'- cGGCCggaGGgacccCGGCAGC-CCG-GGAGAg -3' miRNA: 3'- -CCGGag-CCa----GUCGUCGaGGCuCUUCU- -5' |
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29015 | 5' | -56.9 | NC_006146.1 | + | 31785 | 0.67 | 0.844271 |
Target: 5'- cGCCaUCGG--AGcCAGCUCCGGGAAu- -3' miRNA: 3'- cCGG-AGCCagUC-GUCGAGGCUCUUcu -5' |
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29015 | 5' | -56.9 | NC_006146.1 | + | 33201 | 0.67 | 0.844271 |
Target: 5'- gGGCCUcCGGgugCuccuGguGCUCCGGGGc-- -3' miRNA: 3'- -CCGGA-GCCa--Gu---CguCGAGGCUCUucu -5' |
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29015 | 5' | -56.9 | NC_006146.1 | + | 33326 | 0.68 | 0.819639 |
Target: 5'- gGGCUcCGGggucCGGguGCUCCGGGGc-- -3' miRNA: 3'- -CCGGaGCCa---GUCguCGAGGCUCUucu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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