miRNA display CGI


Results 1 - 20 of 62 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29015 5' -56.9 NC_006146.1 + 166748 0.68 0.793519
Target:  5'- gGGUUUCGGacgggacCAGCAGUggCGAGggGAc -3'
miRNA:   3'- -CCGGAGCCa------GUCGUCGagGCUCuuCU- -5'
29015 5' -56.9 NC_006146.1 + 161744 0.69 0.775385
Target:  5'- aGCC-CGGgggUGGCGGCugaggUCCGAGggGGc -3'
miRNA:   3'- cCGGaGCCa--GUCGUCG-----AGGCUCuuCU- -5'
29015 5' -56.9 NC_006146.1 + 155693 0.66 0.901308
Target:  5'- uGGCC-CGGUacuGCGGgUUCGAGguGAa -3'
miRNA:   3'- -CCGGaGCCAgu-CGUCgAGGCUCuuCU- -5'
29015 5' -56.9 NC_006146.1 + 155201 0.66 0.894929
Target:  5'- -uCCUCGGcCAGUGGCcCCGugauGAAGGu -3'
miRNA:   3'- ccGGAGCCaGUCGUCGaGGCu---CUUCU- -5'
29015 5' -56.9 NC_006146.1 + 150224 0.66 0.907461
Target:  5'- uGGCCagccaggaGGUCAGCAGacuggCCaGGAAGGa -3'
miRNA:   3'- -CCGGag------CCAGUCGUCga---GGcUCUUCU- -5'
29015 5' -56.9 NC_006146.1 + 149849 0.71 0.668636
Target:  5'- gGGCCUCGG-CGaagcGCAGCgucucgcccUCCGAGAAu- -3'
miRNA:   3'- -CCGGAGCCaGU----CGUCG---------AGGCUCUUcu -5'
29015 5' -56.9 NC_006146.1 + 149445 0.66 0.901308
Target:  5'- aGGCCgagagcuugCGG-Cu-CAGCUCCGuGGAGAa -3'
miRNA:   3'- -CCGGa--------GCCaGucGUCGAGGCuCUUCU- -5'
29015 5' -56.9 NC_006146.1 + 129326 0.68 0.811087
Target:  5'- cGCCUCGGcCAGCcaguaGGCggCCGAGuggcuucuaaaGAGAg -3'
miRNA:   3'- cCGGAGCCaGUCG-----UCGa-GGCUC-----------UUCU- -5'
29015 5' -56.9 NC_006146.1 + 128301 0.66 0.901308
Target:  5'- aGGCUUCGGUCAGCucuCUcuuucCCGGGcuGGu -3'
miRNA:   3'- -CCGGAGCCAGUCGuc-GA-----GGCUCuuCU- -5'
29015 5' -56.9 NC_006146.1 + 124577 0.69 0.737694
Target:  5'- cGGCU--GGUCAGaAGCccggCCGAGAGGAa -3'
miRNA:   3'- -CCGGagCCAGUCgUCGa---GGCUCUUCU- -5'
29015 5' -56.9 NC_006146.1 + 123309 0.67 0.852117
Target:  5'- gGGUCUcccucaucaCGGUguGCAGCUgCuGGAAGAg -3'
miRNA:   3'- -CCGGA---------GCCAguCGUCGAgGcUCUUCU- -5'
29015 5' -56.9 NC_006146.1 + 120993 0.67 0.855202
Target:  5'- uGGCCUCGG-CGGC--CUCCGAcuaccucuccuaccuGGAGGa -3'
miRNA:   3'- -CCGGAGCCaGUCGucGAGGCU---------------CUUCU- -5'
29015 5' -56.9 NC_006146.1 + 117169 0.7 0.718278
Target:  5'- cGCCcCGGcgCAGCcgcGGCUCCcgGAGAGGAc -3'
miRNA:   3'- cCGGaGCCa-GUCG---UCGAGG--CUCUUCU- -5'
29015 5' -56.9 NC_006146.1 + 113702 0.69 0.728026
Target:  5'- cGGCC-CGGggaCGGCGGCggcagCCGGGAcGGu -3'
miRNA:   3'- -CCGGaGCCa--GUCGUCGa----GGCUCUuCU- -5'
29015 5' -56.9 NC_006146.1 + 113614 0.68 0.793519
Target:  5'- aGGCCUCcugggggaccGUCAGCuugacgguGCUCCG-GggGAu -3'
miRNA:   3'- -CCGGAGc---------CAGUCGu-------CGAGGCuCuuCU- -5'
29015 5' -56.9 NC_006146.1 + 108901 0.75 0.444505
Target:  5'- cGGCCagCGaGUCAGCAGCgaCCGAGcAGGu -3'
miRNA:   3'- -CCGGa-GC-CAGUCGUCGa-GGCUCuUCU- -5'
29015 5' -56.9 NC_006146.1 + 104974 0.73 0.528784
Target:  5'- aGGCCUgGGgcucccgaGGgGGCUCUGGGGAGAc -3'
miRNA:   3'- -CCGGAgCCag------UCgUCGAGGCUCUUCU- -5'
29015 5' -56.9 NC_006146.1 + 102561 0.66 0.881505
Target:  5'- aGGCgUCcagCAGCAGgUCCGAGccGAg -3'
miRNA:   3'- -CCGgAGccaGUCGUCgAGGCUCuuCU- -5'
29015 5' -56.9 NC_006146.1 + 99600 0.66 0.901308
Target:  5'- gGGCCgCGGUgcucugcgUAGCAcgaggcguagauGCUCCG-GAGGAa -3'
miRNA:   3'- -CCGGaGCCA--------GUCGU------------CGAGGCuCUUCU- -5'
29015 5' -56.9 NC_006146.1 + 95670 0.68 0.811087
Target:  5'- cGCCUCGGUCA--GGCUCUuuGAGAu-- -3'
miRNA:   3'- cCGGAGCCAGUcgUCGAGG--CUCUucu -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.