miRNA display CGI


Results 21 - 40 of 62 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29015 5' -56.9 NC_006146.1 + 39670 0.66 0.888327
Target:  5'- uGGCCUUGGaggCGGCGGgCUCCuGGGc-- -3'
miRNA:   3'- -CCGGAGCCa--GUCGUC-GAGGcUCUucu -5'
29015 5' -56.9 NC_006146.1 + 39835 0.66 0.901308
Target:  5'- cGGCCUCGGccgCA-CAGUgggCCGGcGggGGc -3'
miRNA:   3'- -CCGGAGCCa--GUcGUCGa--GGCU-CuuCU- -5'
29015 5' -56.9 NC_006146.1 + 40319 0.66 0.874469
Target:  5'- gGGCCUCGGU--GgGGUUCaaCGAGAGGu -3'
miRNA:   3'- -CCGGAGCCAguCgUCGAG--GCUCUUCu -5'
29015 5' -56.9 NC_006146.1 + 42910 0.69 0.737694
Target:  5'- gGGCCUCugucccggcuGUCAGCAGCggcgccaagcUCCG-GAGGAc -3'
miRNA:   3'- -CCGGAGc---------CAGUCGUCG----------AGGCuCUUCU- -5'
29015 5' -56.9 NC_006146.1 + 43351 0.68 0.784518
Target:  5'- -aCCUCGGUCAuCAGCUUuagCGAGAcGGAg -3'
miRNA:   3'- ccGGAGCCAGUcGUCGAG---GCUCU-UCU- -5'
29015 5' -56.9 NC_006146.1 + 45725 0.69 0.765195
Target:  5'- aGCCUCGGUUGucuuuccucugauGCuGCUCCGGGGGc- -3'
miRNA:   3'- cCGGAGCCAGU-------------CGuCGAGGCUCUUcu -5'
29015 5' -56.9 NC_006146.1 + 46716 0.73 0.548352
Target:  5'- cGGCCg----CGGCGGCUCCGAGgcGGg -3'
miRNA:   3'- -CCGGagccaGUCGUCGAGGCUCuuCU- -5'
29015 5' -56.9 NC_006146.1 + 47891 1.01 0.00882
Target:  5'- cGGCCUCGGUCAGC-GCUCCGAGAAGAa -3'
miRNA:   3'- -CCGGAGCCAGUCGuCGAGGCUCUUCU- -5'
29015 5' -56.9 NC_006146.1 + 54254 0.78 0.288043
Target:  5'- cGGCCcCGGUCAgGCGGgaaacgucCUCCGAGAGGGu -3'
miRNA:   3'- -CCGGaGCCAGU-CGUC--------GAGGCUCUUCU- -5'
29015 5' -56.9 NC_006146.1 + 54719 0.71 0.618267
Target:  5'- gGGCC-CgGGUCAG-GGCggCCGAGggGAg -3'
miRNA:   3'- -CCGGaG-CCAGUCgUCGa-GGCUCuuCU- -5'
29015 5' -56.9 NC_006146.1 + 54798 0.66 0.881505
Target:  5'- cGCCUUGG---GCAGCUCguugGAGAGGAc -3'
miRNA:   3'- cCGGAGCCaguCGUCGAGg---CUCUUCU- -5'
29015 5' -56.9 NC_006146.1 + 60467 0.67 0.836239
Target:  5'- aGGCCgCGGggAGCGGUgagaggCCGGGggGc -3'
miRNA:   3'- -CCGGaGCCagUCGUCGa-----GGCUCuuCu -5'
29015 5' -56.9 NC_006146.1 + 61478 0.68 0.784518
Target:  5'- uGGCCgagUGG-CAGgaucaccagGGCUCCGAGGAGGc -3'
miRNA:   3'- -CCGGa--GCCaGUCg--------UCGAGGCUCUUCU- -5'
29015 5' -56.9 NC_006146.1 + 63050 0.67 0.844271
Target:  5'- uGGCCUagagCGGagacgCAGCAuuuucuGCUCuCGGGggGAa -3'
miRNA:   3'- -CCGGA----GCCa----GUCGU------CGAG-GCUCuuCU- -5'
29015 5' -56.9 NC_006146.1 + 67731 0.73 0.537559
Target:  5'- aGGCCUCGGUCc---GCUCCGcccagacGGAGGAg -3'
miRNA:   3'- -CCGGAGCCAGucguCGAGGC-------UCUUCU- -5'
29015 5' -56.9 NC_006146.1 + 67816 0.68 0.819639
Target:  5'- cGCCUCGGaaguaaaCAGCUCCGuGAGGu -3'
miRNA:   3'- cCGGAGCCaguc---GUCGAGGCuCUUCu -5'
29015 5' -56.9 NC_006146.1 + 68191 0.76 0.384443
Target:  5'- aGGacgCGGgcgCAGCGGCUCCGGGAGGu -3'
miRNA:   3'- -CCggaGCCa--GUCGUCGAGGCUCUUCu -5'
29015 5' -56.9 NC_006146.1 + 69464 0.66 0.901308
Target:  5'- uGGCgaccgUGGUguGCAGCUuggCCGAGAcGAa -3'
miRNA:   3'- -CCGga---GCCAguCGUCGA---GGCUCUuCU- -5'
29015 5' -56.9 NC_006146.1 + 69696 0.67 0.852117
Target:  5'- aGGCUgccaggUGGaUCuuCAGCUCCGAGggGc -3'
miRNA:   3'- -CCGGa-----GCC-AGucGUCGAGGCUCuuCu -5'
29015 5' -56.9 NC_006146.1 + 77283 0.67 0.844271
Target:  5'- cGGCCUcCGGggaggaCAGCAGC-CCcAGGAGc -3'
miRNA:   3'- -CCGGA-GCCa-----GUCGUCGaGGcUCUUCu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.