miRNA display CGI


Results 21 - 40 of 62 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29015 5' -56.9 NC_006146.1 + 54254 0.78 0.288043
Target:  5'- cGGCCcCGGUCAgGCGGgaaacgucCUCCGAGAGGGu -3'
miRNA:   3'- -CCGGaGCCAGU-CGUC--------GAGGCUCUUCU- -5'
29015 5' -56.9 NC_006146.1 + 47891 1.01 0.00882
Target:  5'- cGGCCUCGGUCAGC-GCUCCGAGAAGAa -3'
miRNA:   3'- -CCGGAGCCAGUCGuCGAGGCUCUUCU- -5'
29015 5' -56.9 NC_006146.1 + 12956 0.67 0.844271
Target:  5'- uGGCCUUGG--GGUAGCUCUgGAGucaGAGAg -3'
miRNA:   3'- -CCGGAGCCagUCGUCGAGG-CUC---UUCU- -5'
29015 5' -56.9 NC_006146.1 + 11540 0.68 0.819639
Target:  5'- aGGCCUUGGccaaUCAGCGGUcCCuaAGggGGg -3'
miRNA:   3'- -CCGGAGCC----AGUCGUCGaGGc-UCuuCU- -5'
29015 5' -56.9 NC_006146.1 + 128301 0.66 0.901308
Target:  5'- aGGCUUCGGUCAGCucuCUcuuucCCGGGcuGGu -3'
miRNA:   3'- -CCGGAGCCAGUCGuc-GA-----GGCUCuuCU- -5'
29015 5' -56.9 NC_006146.1 + 102561 0.66 0.881505
Target:  5'- aGGCgUCcagCAGCAGgUCCGAGccGAg -3'
miRNA:   3'- -CCGgAGccaGUCGUCgAGGCUCuuCU- -5'
29015 5' -56.9 NC_006146.1 + 31785 0.67 0.844271
Target:  5'- cGCCaUCGG--AGcCAGCUCCGGGAAu- -3'
miRNA:   3'- cCGG-AGCCagUC-GUCGAGGCUCUUcu -5'
29015 5' -56.9 NC_006146.1 + 95670 0.68 0.811087
Target:  5'- cGCCUCGGUCA--GGCUCUuuGAGAu-- -3'
miRNA:   3'- cCGGAGCCAGUcgUCGAGG--CUCUucu -5'
29015 5' -56.9 NC_006146.1 + 40319 0.66 0.874469
Target:  5'- gGGCCUCGGU--GgGGUUCaaCGAGAGGu -3'
miRNA:   3'- -CCGGAGCCAguCgUCGAG--GCUCUUCu -5'
29015 5' -56.9 NC_006146.1 + 29122 0.68 0.811087
Target:  5'- cGGCCggaGGgacccCGGCAGC-CCG-GGAGAg -3'
miRNA:   3'- -CCGGag-CCa----GUCGUCGaGGCuCUUCU- -5'
29015 5' -56.9 NC_006146.1 + 123309 0.67 0.852117
Target:  5'- gGGUCUcccucaucaCGGUguGCAGCUgCuGGAAGAg -3'
miRNA:   3'- -CCGGA---------GCCAguCGUCGAgGcUCUUCU- -5'
29015 5' -56.9 NC_006146.1 + 69696 0.67 0.852117
Target:  5'- aGGCUgccaggUGGaUCuuCAGCUCCGAGggGc -3'
miRNA:   3'- -CCGGa-----GCC-AGucGUCGAGGCUCuuCu -5'
29015 5' -56.9 NC_006146.1 + 63050 0.67 0.844271
Target:  5'- uGGCCUagagCGGagacgCAGCAuuuucuGCUCuCGGGggGAa -3'
miRNA:   3'- -CCGGA----GCCa----GUCGU------CGAG-GCUCuuCU- -5'
29015 5' -56.9 NC_006146.1 + 33201 0.67 0.844271
Target:  5'- gGGCCUcCGGgugCuccuGguGCUCCGGGGc-- -3'
miRNA:   3'- -CCGGA-GCCa--Gu---CguCGAGGCUCUucu -5'
29015 5' -56.9 NC_006146.1 + 67816 0.68 0.819639
Target:  5'- cGCCUCGGaaguaaaCAGCUCCGuGAGGu -3'
miRNA:   3'- cCGGAGCCaguc---GUCGAGGCuCUUCu -5'
29015 5' -56.9 NC_006146.1 + 33326 0.68 0.819639
Target:  5'- gGGCUcCGGggucCGGguGCUCCGGGGc-- -3'
miRNA:   3'- -CCGGaGCCa---GUCguCGAGGCUCUucu -5'
29015 5' -56.9 NC_006146.1 + 150224 0.66 0.907461
Target:  5'- uGGCCagccaggaGGUCAGCAGacuggCCaGGAAGGa -3'
miRNA:   3'- -CCGGag------CCAGUCGUCga---GGcUCUUCU- -5'
29015 5' -56.9 NC_006146.1 + 149445 0.66 0.901308
Target:  5'- aGGCCgagagcuugCGG-Cu-CAGCUCCGuGGAGAa -3'
miRNA:   3'- -CCGGa--------GCCaGucGUCGAGGCuCUUCU- -5'
29015 5' -56.9 NC_006146.1 + 155201 0.66 0.894929
Target:  5'- -uCCUCGGcCAGUGGCcCCGugauGAAGGu -3'
miRNA:   3'- ccGGAGCCaGUCGUCGaGGCu---CUUCU- -5'
29015 5' -56.9 NC_006146.1 + 54798 0.66 0.881505
Target:  5'- cGCCUUGG---GCAGCUCguugGAGAGGAc -3'
miRNA:   3'- cCGGAGCCaguCGUCGAGg---CUCUUCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.