miRNA display CGI


Results 61 - 80 of 336 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29021 3' -59.5 NC_006146.1 + 33727 0.7 0.528143
Target:  5'- gCAGCGGcccGGCCAcCCCCCgccGGAGCGg- -3'
miRNA:   3'- aGUCGUU---CCGGUaGGGGG---CCUCGUgg -5'
29021 3' -59.5 NC_006146.1 + 33820 0.7 0.528143
Target:  5'- gCAGCGGcccGGCCAcCCCCCgccGGAGCGg- -3'
miRNA:   3'- aGUCGUU---CCGGUaGGGGG---CCUCGUgg -5'
29021 3' -59.5 NC_006146.1 + 33913 0.71 0.490378
Target:  5'- gCAGCGGcccGGCCAccCCCgCCGGAGCGg- -3'
miRNA:   3'- aGUCGUU---CCGGUa-GGG-GGCCUCGUgg -5'
29021 3' -59.5 NC_006146.1 + 34005 0.7 0.528143
Target:  5'- gCAGCGGcccGGCCAcCCCCCgccGGAGCGg- -3'
miRNA:   3'- aGUCGUU---CCGGUaGGGGG---CCUCGUgg -5'
29021 3' -59.5 NC_006146.1 + 34074 0.66 0.780633
Target:  5'- -uGGCAcgGGGCCggggGUCCCggGGGGCAgCCg -3'
miRNA:   3'- agUCGU--UCCGG----UAGGGggCCUCGU-GG- -5'
29021 3' -59.5 NC_006146.1 + 34098 0.7 0.528143
Target:  5'- gCAGCGGcccGGCCAcCCCCCgccGGAGCGg- -3'
miRNA:   3'- aGUCGUU---CCGGUaGGGGG---CCUCGUgg -5'
29021 3' -59.5 NC_006146.1 + 34140 0.71 0.518593
Target:  5'- gCGGCcGGGCC---UCCCGGAGCcCCg -3'
miRNA:   3'- aGUCGuUCCGGuagGGGGCCUCGuGG- -5'
29021 3' -59.5 NC_006146.1 + 34191 0.7 0.528143
Target:  5'- gCAGCGGcccGGCCAcCCCCCgccGGAGCGg- -3'
miRNA:   3'- aGUCGUU---CCGGUaGGGGG---CCUCGUgg -5'
29021 3' -59.5 NC_006146.1 + 34284 0.7 0.528143
Target:  5'- gCAGCGGcccGGCCAcCCCCCgccGGAGCGg- -3'
miRNA:   3'- aGUCGUU---CCGGUaGGGGG---CCUCGUgg -5'
29021 3' -59.5 NC_006146.1 + 34377 0.7 0.528143
Target:  5'- gCAGCGGcccGGCCAcCCCCCgccGGAGCGg- -3'
miRNA:   3'- aGUCGUU---CCGGUaGGGGG---CCUCGUgg -5'
29021 3' -59.5 NC_006146.1 + 34470 0.7 0.528143
Target:  5'- gCAGCGGcccGGCCAcCCCCCgccGGAGCGg- -3'
miRNA:   3'- aGUCGUU---CCGGUaGGGGG---CCUCGUgg -5'
29021 3' -59.5 NC_006146.1 + 34563 0.7 0.528143
Target:  5'- gCAGCGGcccGGCCAcCCCCCgccGGAGCGg- -3'
miRNA:   3'- aGUCGUU---CCGGUaGGGGG---CCUCGUgg -5'
29021 3' -59.5 NC_006146.1 + 34656 0.7 0.528143
Target:  5'- gCAGCGGcccGGCCAcCCCCCgccGGAGCGg- -3'
miRNA:   3'- aGUCGUU---CCGGUaGGGGG---CCUCGUgg -5'
29021 3' -59.5 NC_006146.1 + 34696 0.67 0.753111
Target:  5'- uUCAGCuAGGU--UCCUaCUGGGGUACCc -3'
miRNA:   3'- -AGUCGuUCCGguAGGG-GGCCUCGUGG- -5'
29021 3' -59.5 NC_006146.1 + 34749 0.7 0.528143
Target:  5'- gCAGCGGcccGGCCAcCCCCCgccGGAGCGg- -3'
miRNA:   3'- aGUCGUU---CCGGUaGGGGG---CCUCGUgg -5'
29021 3' -59.5 NC_006146.1 + 34842 0.7 0.528143
Target:  5'- gCAGCGGcccGGCCAcCCCCCgccGGAGCGg- -3'
miRNA:   3'- aGUCGUU---CCGGUaGGGGG---CCUCGUgg -5'
29021 3' -59.5 NC_006146.1 + 34920 0.67 0.715046
Target:  5'- aCGGUugccuGGcCCAUCCCCCaccccAGCACCc -3'
miRNA:   3'- aGUCGuu---CC-GGUAGGGGGcc---UCGUGG- -5'
29021 3' -59.5 NC_006146.1 + 34934 0.7 0.528143
Target:  5'- gCAGCGGcccGGCCAcCCCCCgccGGAGCGg- -3'
miRNA:   3'- aGUCGUU---CCGGUaGGGGG---CCUCGUgg -5'
29021 3' -59.5 NC_006146.1 + 35027 0.7 0.528143
Target:  5'- gCAGCGGcccGGCCAcCCCCCgccGGAGCGg- -3'
miRNA:   3'- aGUCGUU---CCGGUaGGGGG---CCUCGUgg -5'
29021 3' -59.5 NC_006146.1 + 35120 0.7 0.528143
Target:  5'- gCAGCGGcccGGCCAcCCCCCgccGGAGCGg- -3'
miRNA:   3'- aGUCGUU---CCGGUaGGGGG---CCUCGUgg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.