miRNA display CGI


Results 41 - 60 of 336 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29021 3' -59.5 NC_006146.1 + 24685 0.68 0.695578
Target:  5'- gCAGCcauGGCCGccgcuuaCCCCGGAGgaGCCc -3'
miRNA:   3'- aGUCGuu-CCGGUag-----GGGGCCUCg-UGG- -5'
29021 3' -59.5 NC_006146.1 + 25424 0.71 0.47197
Target:  5'- -aGGCGGGGuCCGgccUCUCCUGGGGCAgCa -3'
miRNA:   3'- agUCGUUCC-GGU---AGGGGGCCUCGUgG- -5'
29021 3' -59.5 NC_006146.1 + 25672 0.69 0.596498
Target:  5'- gUCAGagGGGaGCCG-CCCUCGGGGC-CCa -3'
miRNA:   3'- -AGUCg-UUC-CGGUaGGGGGCCUCGuGG- -5'
29021 3' -59.5 NC_006146.1 + 27357 0.7 0.557157
Target:  5'- gCGGCAAGGCCGgggggcgUCUggacagcagcaaCCGGGGCACa -3'
miRNA:   3'- aGUCGUUCCGGUa------GGG------------GGCCUCGUGg -5'
29021 3' -59.5 NC_006146.1 + 28502 0.71 0.47197
Target:  5'- -aGGCGGGGuCCGgccUCUCCUGGGGCAgCa -3'
miRNA:   3'- agUCGUUCC-GGU---AGGGGGCCUCGUgG- -5'
29021 3' -59.5 NC_006146.1 + 28750 0.69 0.596498
Target:  5'- gUCAGagGGGaGCCG-CCCUCGGGGC-CCa -3'
miRNA:   3'- -AGUCg-UUC-CGGUaGGGGGCCUCGuGG- -5'
29021 3' -59.5 NC_006146.1 + 30203 0.67 0.743725
Target:  5'- aCAGCcagAGGGCCGcugcgCCCgCCGG-GCugGCCg -3'
miRNA:   3'- aGUCG---UUCCGGUa----GGG-GGCCuCG--UGG- -5'
29021 3' -59.5 NC_006146.1 + 30747 0.68 0.67591
Target:  5'- ----gAGGGCCcgCaaacuguaCCCGGGGCACCc -3'
miRNA:   3'- agucgUUCCGGuaGg-------GGGCCUCGUGG- -5'
29021 3' -59.5 NC_006146.1 + 31448 0.74 0.346682
Target:  5'- cCAGUGcAGGCaccCCCCCGG-GCACCg -3'
miRNA:   3'- aGUCGU-UCCGguaGGGGGCCuCGUGG- -5'
29021 3' -59.5 NC_006146.1 + 31495 0.7 0.528143
Target:  5'- aCAGC-AGGCaCcUCCCCCG--GCGCCg -3'
miRNA:   3'- aGUCGuUCCG-GuAGGGGGCcuCGUGG- -5'
29021 3' -59.5 NC_006146.1 + 31540 0.68 0.646174
Target:  5'- aCAGC-AGGCacccCCCCCGGcGcCGCCc -3'
miRNA:   3'- aGUCGuUCCGgua-GGGGGCCuC-GUGG- -5'
29021 3' -59.5 NC_006146.1 + 32117 0.7 0.547429
Target:  5'- gCAcGCAGGGgugccaCGUCaCCCCGGGGUGCUg -3'
miRNA:   3'- aGU-CGUUCCg-----GUAG-GGGGCCUCGUGG- -5'
29021 3' -59.5 NC_006146.1 + 32996 0.66 0.789566
Target:  5'- uUCAGUGccGCCGcuaCCCCCGGGGgAUg -3'
miRNA:   3'- -AGUCGUucCGGUa--GGGGGCCUCgUGg -5'
29021 3' -59.5 NC_006146.1 + 33185 0.7 0.528143
Target:  5'- cCGGguAGGCCcgggcaCCCCCGGGGggagGCCg -3'
miRNA:   3'- aGUCguUCCGGua----GGGGGCCUCg---UGG- -5'
29021 3' -59.5 NC_006146.1 + 33192 0.66 0.759623
Target:  5'- cUCGGUccuGGGCCuccgggugcuccugGUgCUCCGGGGCAgCCg -3'
miRNA:   3'- -AGUCGu--UCCGG--------------UAgGGGGCCUCGU-GG- -5'
29021 3' -59.5 NC_006146.1 + 33355 0.7 0.528143
Target:  5'- gCAGCGGcccGGCCAcCCCCCgccGGAGCGg- -3'
miRNA:   3'- aGUCGUU---CCGGUaGGGGG---CCUCGUgg -5'
29021 3' -59.5 NC_006146.1 + 33448 0.7 0.528143
Target:  5'- gCAGCGGcccGGCCAcCCCCCgccGGAGCGg- -3'
miRNA:   3'- aGUCGUU---CCGGUaGGGGG---CCUCGUgg -5'
29021 3' -59.5 NC_006146.1 + 33541 0.7 0.528143
Target:  5'- gCAGCGGcccGGCCAcCCCCCgccGGAGCGg- -3'
miRNA:   3'- aGUCGUU---CCGGUaGGGGG---CCUCGUgg -5'
29021 3' -59.5 NC_006146.1 + 33546 0.66 0.798366
Target:  5'- cCGGCuugccuGGCCcuggugcUCCUCCGGGGguCGCCg -3'
miRNA:   3'- aGUCGuu----CCGGu------AGGGGGCCUC--GUGG- -5'
29021 3' -59.5 NC_006146.1 + 33634 0.7 0.528143
Target:  5'- gCAGCGGcccGGCCAcCCCCCgccGGAGCGg- -3'
miRNA:   3'- aGUCGUU---CCGGUaGGGGG---CCUCGUgg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.