miRNA display CGI


Results 41 - 60 of 336 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29021 3' -59.5 NC_006146.1 + 168527 0.72 0.436248
Target:  5'- -aGGCcGGGCC-UCCCCUGGGG-GCCu -3'
miRNA:   3'- agUCGuUCCGGuAGGGGGCCUCgUGG- -5'
29021 3' -59.5 NC_006146.1 + 167595 0.72 0.436248
Target:  5'- -aGGCcGGGCC-UCCCCUGGGG-GCCu -3'
miRNA:   3'- agUCGuUCCGGuAGGGGGCCUCgUGG- -5'
29021 3' -59.5 NC_006146.1 + 169459 0.72 0.436248
Target:  5'- -aGGCcGGGCC-UCCCCUGGGG-GCCu -3'
miRNA:   3'- agUCGuUCCGGuAGGGGGCCUCgUGG- -5'
29021 3' -59.5 NC_006146.1 + 130739 0.72 0.436248
Target:  5'- gCGGC-GGGCUcUUCCCCGGAGaagaCGCCg -3'
miRNA:   3'- aGUCGuUCCGGuAGGGGGCCUC----GUGG- -5'
29021 3' -59.5 NC_006146.1 + 43507 0.72 0.437122
Target:  5'- gCGGCGGGGCCcagCCCCaagacaccuccacgaGGGGCGCg -3'
miRNA:   3'- aGUCGUUCCGGua-GGGGg--------------CCUCGUGg -5'
29021 3' -59.5 NC_006146.1 + 46858 0.72 0.444151
Target:  5'- uUCAGUAcacugGGGCCAugacgcgcaauuuUCUCCUGG-GCACCu -3'
miRNA:   3'- -AGUCGU-----UCCGGU-------------AGGGGGCCuCGUGG- -5'
29021 3' -59.5 NC_006146.1 + 74748 0.72 0.445034
Target:  5'- cCAGUGA-GCCAgCCUCCGGGGgGCCa -3'
miRNA:   3'- aGUCGUUcCGGUaGGGGGCCUCgUGG- -5'
29021 3' -59.5 NC_006146.1 + 78815 0.72 0.445034
Target:  5'- gCAGCAgccccaggccGGGCCGcCCCCCGcAGCAgCCc -3'
miRNA:   3'- aGUCGU----------UCCGGUaGGGGGCcUCGU-GG- -5'
29021 3' -59.5 NC_006146.1 + 154894 0.72 0.445034
Target:  5'- -gGGCAGGGCC-UCgCCCGG-GCugACCg -3'
miRNA:   3'- agUCGUUCCGGuAGgGGGCCuCG--UGG- -5'
29021 3' -59.5 NC_006146.1 + 43942 0.72 0.453025
Target:  5'- -gGGCGGGGuCUAUCCagacgcgCCCGGAgaGCGCCa -3'
miRNA:   3'- agUCGUUCC-GGUAGG-------GGGCCU--CGUGG- -5'
29021 3' -59.5 NC_006146.1 + 45007 0.72 0.453919
Target:  5'- cUCGGUGAGGCCccaccGUCCCUCGaGAGUgagggagagagGCCg -3'
miRNA:   3'- -AGUCGUUCCGG-----UAGGGGGC-CUCG-----------UGG- -5'
29021 3' -59.5 NC_006146.1 + 45664 0.72 0.462898
Target:  5'- cCGGCGccAGGCCAguggcUCCCCUGGAuugcuggauccuGCACg -3'
miRNA:   3'- aGUCGU--UCCGGU-----AGGGGGCCU------------CGUGg -5'
29021 3' -59.5 NC_006146.1 + 125930 0.72 0.462898
Target:  5'- -gGGUccGGCCAccgcggucgagUCCCCCGGGGCcuCCc -3'
miRNA:   3'- agUCGuuCCGGU-----------AGGGGGCCUCGu-GG- -5'
29021 3' -59.5 NC_006146.1 + 101832 0.72 0.462898
Target:  5'- uUCGGCGGGGCCcgagCgCUCGGGcugccGCACCa -3'
miRNA:   3'- -AGUCGUUCCGGua--GgGGGCCU-----CGUGG- -5'
29021 3' -59.5 NC_006146.1 + 3890 0.71 0.470148
Target:  5'- cUCGGCGAGGCCcaccgacgaggCCCCCaaggucucGGGUACCg -3'
miRNA:   3'- -AGUCGUUCCGGua---------GGGGGc-------CUCGUGG- -5'
29021 3' -59.5 NC_006146.1 + 51811 0.71 0.47197
Target:  5'- aUCAGgAGGGCgGccUCCUCgGGAaGCGCCg -3'
miRNA:   3'- -AGUCgUUCCGgU--AGGGGgCCU-CGUGG- -5'
29021 3' -59.5 NC_006146.1 + 16190 0.71 0.47197
Target:  5'- -aGGCGGGGuCCGgccUCUCCUGGGGCAgCa -3'
miRNA:   3'- agUCGUUCC-GGU---AGGGGGCCUCGUgG- -5'
29021 3' -59.5 NC_006146.1 + 13112 0.71 0.47197
Target:  5'- -aGGCGGGGuCCGgccUCUCCUGGGGCAgCa -3'
miRNA:   3'- agUCGUUCC-GGU---AGGGGGCCUCGUgG- -5'
29021 3' -59.5 NC_006146.1 + 15311 0.71 0.47197
Target:  5'- -gGGCcgGAGGCCAg-CCCCGGuGUGCCc -3'
miRNA:   3'- agUCG--UUCCGGUagGGGGCCuCGUGG- -5'
29021 3' -59.5 NC_006146.1 + 19268 0.71 0.47197
Target:  5'- -aGGCGGGGuCCGgccUCUCCUGGGGCAgCa -3'
miRNA:   3'- agUCGUUCC-GGU---AGGGGGCCUCGUgG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.