miRNA display CGI


Results 21 - 40 of 336 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29021 3' -59.5 NC_006146.1 + 137629 0.74 0.331877
Target:  5'- cCAGCcGGGCCAcCCCCCacccggagcGGGGCAgCg -3'
miRNA:   3'- aGUCGuUCCGGUaGGGGG---------CCUCGUgG- -5'
29021 3' -59.5 NC_006146.1 + 137752 0.74 0.331877
Target:  5'- cCAGCcGGGCCAcCCCCCacccggagcGGGGCAgCg -3'
miRNA:   3'- aGUCGuUCCGGUaGGGGG---------CCUCGUgG- -5'
29021 3' -59.5 NC_006146.1 + 94510 0.74 0.339221
Target:  5'- gUCGGCGcccccGGuCCcUCCCCCGGcGCGCCc -3'
miRNA:   3'- -AGUCGUu----CC-GGuAGGGGGCCuCGUGG- -5'
29021 3' -59.5 NC_006146.1 + 170666 0.74 0.34593
Target:  5'- aUCGGCGcgggggAGGCCAggggCgCCCCGGggaccgucgcgggGGCACCg -3'
miRNA:   3'- -AGUCGU------UCCGGUa---G-GGGGCC-------------UCGUGG- -5'
29021 3' -59.5 NC_006146.1 + 31448 0.74 0.346682
Target:  5'- cCAGUGcAGGCaccCCCCCGG-GCACCg -3'
miRNA:   3'- aGUCGU-UCCGguaGGGGGCCuCGUGG- -5'
29021 3' -59.5 NC_006146.1 + 141308 0.74 0.346682
Target:  5'- uUCAGCcuGGCUgagCCCCCGGGGU-CCu -3'
miRNA:   3'- -AGUCGuuCCGGua-GGGGGCCUCGuGG- -5'
29021 3' -59.5 NC_006146.1 + 124845 0.74 0.35426
Target:  5'- gCAGCuauGGCacucgcugCGUCCCCUGGAGgGCCc -3'
miRNA:   3'- aGUCGuu-CCG--------GUAGGGGGCCUCgUGG- -5'
29021 3' -59.5 NC_006146.1 + 47525 0.74 0.361954
Target:  5'- cCAGCcAGGUugCGgggCCCCCGGccAGCGCCa -3'
miRNA:   3'- aGUCGuUCCG--GUa--GGGGGCC--UCGUGG- -5'
29021 3' -59.5 NC_006146.1 + 35771 0.73 0.393874
Target:  5'- gCAGCGGcccGGCCAcCCCCCgccGGAGCAaacCCa -3'
miRNA:   3'- aGUCGUU---CCGGUaGGGGG---CCUCGU---GG- -5'
29021 3' -59.5 NC_006146.1 + 104188 0.73 0.393874
Target:  5'- --cGCAGGGCCGUcugcgcCCCCaCGGGGCcgcaaGCCg -3'
miRNA:   3'- aguCGUUCCGGUA------GGGG-GCCUCG-----UGG- -5'
29021 3' -59.5 NC_006146.1 + 56256 0.73 0.393874
Target:  5'- -aGGCGGGGCCGUCCUCggcggGGAGCgaggagGCCa -3'
miRNA:   3'- agUCGUUCCGGUAGGGGg----CCUCG------UGG- -5'
29021 3' -59.5 NC_006146.1 + 137696 0.73 0.402134
Target:  5'- cCGGCucccccuccGGCCucCCCCCGGGGUGCCc -3'
miRNA:   3'- aGUCGuu-------CCGGuaGGGGGCCUCGUGG- -5'
29021 3' -59.5 NC_006146.1 + 24024 0.73 0.409662
Target:  5'- cCGGCGAGGCguCGUCCCCCuggcGGGGUgacgcggccccgaGCCa -3'
miRNA:   3'- aGUCGUUCCG--GUAGGGGG----CCUCG-------------UGG- -5'
29021 3' -59.5 NC_006146.1 + 106660 0.73 0.410503
Target:  5'- -uGGuCAGGGCCGUCcucuCCCCGG-GCACg -3'
miRNA:   3'- agUC-GUUCCGGUAG----GGGGCCuCGUGg -5'
29021 3' -59.5 NC_006146.1 + 113523 0.73 0.410503
Target:  5'- --cGCGGGGCCAgCCCaCCGGcGcCACCg -3'
miRNA:   3'- aguCGUUCCGGUaGGG-GGCCuC-GUGG- -5'
29021 3' -59.5 NC_006146.1 + 49022 0.72 0.41898
Target:  5'- --cGCAGGG-CGUUCUCCGGGGCGCg -3'
miRNA:   3'- aguCGUUCCgGUAGGGGGCCUCGUGg -5'
29021 3' -59.5 NC_006146.1 + 56534 0.72 0.419834
Target:  5'- aUCAGCAgcugacgcgucacgcGGGCCAggCCCCCguccaccuccgucaGGGGCgGCCg -3'
miRNA:   3'- -AGUCGU---------------UCCGGUa-GGGGG--------------CCUCG-UGG- -5'
29021 3' -59.5 NC_006146.1 + 74249 0.72 0.427562
Target:  5'- cCuGCGcGGCCGUCuCCCCGG-GCugGCCa -3'
miRNA:   3'- aGuCGUuCCGGUAG-GGGGCCuCG--UGG- -5'
29021 3' -59.5 NC_006146.1 + 71258 0.72 0.435375
Target:  5'- -uGGCGGGgggcggccucuacGCCuUCCUCCGGAGCAUCu -3'
miRNA:   3'- agUCGUUC-------------CGGuAGGGGGCCUCGUGG- -5'
29021 3' -59.5 NC_006146.1 + 130739 0.72 0.436248
Target:  5'- gCGGC-GGGCUcUUCCCCGGAGaagaCGCCg -3'
miRNA:   3'- aGUCGuUCCGGuAGGGGGCCUC----GUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.