Results 21 - 40 of 336 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29021 | 3' | -59.5 | NC_006146.1 | + | 167180 | 0.66 | 0.780633 |
Target: 5'- aCGG-GAGGCCGgcgcgCgCCCGGGGUcCCg -3' miRNA: 3'- aGUCgUUCCGGUa----GgGGGCCUCGuGG- -5' |
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29021 | 3' | -59.5 | NC_006146.1 | + | 60003 | 0.66 | 0.780633 |
Target: 5'- --uGCAAGGCCAacgcggccccgUCCCCGccuGCGCCc -3' miRNA: 3'- aguCGUUCCGGUa----------GGGGGCcu-CGUGG- -5' |
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29021 | 3' | -59.5 | NC_006146.1 | + | 123702 | 0.66 | 0.789566 |
Target: 5'- gCGGCcaGGGGCCuggCgCUCGGGGCGgCg -3' miRNA: 3'- aGUCG--UUCCGGua-GgGGGCCUCGUgG- -5' |
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29021 | 3' | -59.5 | NC_006146.1 | + | 98311 | 0.66 | 0.789566 |
Target: 5'- --uGCGAGuGCCGggguucuaaCCCCGGcaagccccAGCACCa -3' miRNA: 3'- aguCGUUC-CGGUag-------GGGGCC--------UCGUGG- -5' |
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29021 | 3' | -59.5 | NC_006146.1 | + | 17488 | 0.66 | 0.798366 |
Target: 5'- cCAGCcacaCCcgCCCCCGGgaacucccuuGGCACCc -3' miRNA: 3'- aGUCGuuccGGuaGGGGGCC----------UCGUGG- -5' |
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29021 | 3' | -59.5 | NC_006146.1 | + | 42068 | 0.66 | 0.798366 |
Target: 5'- -uGGCcGGGCUuaccugCUCCUGGAccGCGCCg -3' miRNA: 3'- agUCGuUCCGGua----GGGGGCCU--CGUGG- -5' |
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29021 | 3' | -59.5 | NC_006146.1 | + | 1155 | 0.66 | 0.798366 |
Target: 5'- -gGGUccccGGGCCGccccggggcUCCCCCGcgccgaucuGAGCGCCc -3' miRNA: 3'- agUCGu---UCCGGU---------AGGGGGC---------CUCGUGG- -5' |
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29021 | 3' | -59.5 | NC_006146.1 | + | 2087 | 0.66 | 0.798366 |
Target: 5'- -gGGUccccGGGCCGccccggggcUCCCCCGcgccgaucuGAGCGCCc -3' miRNA: 3'- agUCGu---UCCGGU---------AGGGGGC---------CUCGUGG- -5' |
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29021 | 3' | -59.5 | NC_006146.1 | + | 3019 | 0.66 | 0.798366 |
Target: 5'- -gGGUccccGGGCCGccccggggcUCCCCCGcgccgaucuGAGCGCCc -3' miRNA: 3'- agUCGu---UCCGGU---------AGGGGGC---------CUCGUGG- -5' |
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29021 | 3' | -59.5 | NC_006146.1 | + | 90098 | 0.66 | 0.801847 |
Target: 5'- -aGGCcguaaaugaaaaugaGGGGCC-UCCUCUGGGGUAUCu -3' miRNA: 3'- agUCG---------------UUCCGGuAGGGGGCCUCGUGG- -5' |
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29021 | 3' | -59.5 | NC_006146.1 | + | 207 | 0.66 | 0.789566 |
Target: 5'- --cGCcGGuGCCcccgcgacggUCCCCGGGGCGCCc -3' miRNA: 3'- aguCGuUC-CGGua--------GGGGGCCUCGUGG- -5' |
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29021 | 3' | -59.5 | NC_006146.1 | + | 60875 | 0.66 | 0.789566 |
Target: 5'- gUCA-CGAGGCCAUCUUUgaucaggaCGGAGC-CCu -3' miRNA: 3'- -AGUcGUUCCGGUAGGGG--------GCCUCGuGG- -5' |
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29021 | 3' | -59.5 | NC_006146.1 | + | 85915 | 0.66 | 0.779733 |
Target: 5'- --cGCGGGGCUuuaCCCUGGGGCcuggaugGCCu -3' miRNA: 3'- aguCGUUCCGGuagGGGGCCUCG-------UGG- -5' |
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29021 | 3' | -59.5 | NC_006146.1 | + | 41249 | 0.66 | 0.762397 |
Target: 5'- -aAGCGcucucGCCAUUCCCgggCGGAGCACg -3' miRNA: 3'- agUCGUuc---CGGUAGGGG---GCCUCGUGg -5' |
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29021 | 3' | -59.5 | NC_006146.1 | + | 119254 | 0.66 | 0.771574 |
Target: 5'- cCGGCccuGGCCcccugggaGUCCagagCCUGGAGCACa -3' miRNA: 3'- aGUCGuu-CCGG--------UAGG----GGGCCUCGUGg -5' |
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29021 | 3' | -59.5 | NC_006146.1 | + | 34074 | 0.66 | 0.780633 |
Target: 5'- -uGGCAcgGGGCCggggGUCCCggGGGGCAgCCg -3' miRNA: 3'- agUCGU--UCCGG----UAGGGggCCUCGU-GG- -5' |
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29021 | 3' | -59.5 | NC_006146.1 | + | 118248 | 0.66 | 0.762397 |
Target: 5'- -gGGCGAGGCUGgacgCCCUCau-GCGCCa -3' miRNA: 3'- agUCGUUCCGGUa---GGGGGccuCGUGG- -5' |
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29021 | 3' | -59.5 | NC_006146.1 | + | 15035 | 0.66 | 0.771574 |
Target: 5'- -gGGCGccuGGCCAgggCCCgCCGGgccugcgaggaGGCACUg -3' miRNA: 3'- agUCGUu--CCGGUa--GGG-GGCC-----------UCGUGG- -5' |
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29021 | 3' | -59.5 | NC_006146.1 | + | 75398 | 0.66 | 0.780633 |
Target: 5'- aCAGCucccggauaugGAGGCCuucUCCCCC-GAGUuugACCc -3' miRNA: 3'- aGUCG-----------UUCCGGu--AGGGGGcCUCG---UGG- -5' |
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29021 | 3' | -59.5 | NC_006146.1 | + | 12077 | 0.66 | 0.789566 |
Target: 5'- --uGCgAGGGCCGggCCCCGGccguGUGCCu -3' miRNA: 3'- aguCG-UUCCGGUagGGGGCCu---CGUGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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