Results 21 - 40 of 336 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29021 | 3' | -59.5 | NC_006146.1 | + | 170666 | 0.74 | 0.34593 |
Target: 5'- aUCGGCGcgggggAGGCCAggggCgCCCCGGggaccgucgcgggGGCACCg -3' miRNA: 3'- -AGUCGU------UCCGGUa---G-GGGGCC-------------UCGUGG- -5' |
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29021 | 3' | -59.5 | NC_006146.1 | + | 137629 | 0.74 | 0.331877 |
Target: 5'- cCAGCcGGGCCAcCCCCCacccggagcGGGGCAgCg -3' miRNA: 3'- aGUCGuUCCGGUaGGGGG---------CCUCGUgG- -5' |
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29021 | 3' | -59.5 | NC_006146.1 | + | 141308 | 0.74 | 0.346682 |
Target: 5'- uUCAGCcuGGCUgagCCCCCGGGGU-CCu -3' miRNA: 3'- -AGUCGuuCCGGua-GGGGGCCUCGuGG- -5' |
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29021 | 3' | -59.5 | NC_006146.1 | + | 31448 | 0.74 | 0.346682 |
Target: 5'- cCAGUGcAGGCaccCCCCCGG-GCACCg -3' miRNA: 3'- aGUCGU-UCCGguaGGGGGCCuCGUGG- -5' |
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29021 | 3' | -59.5 | NC_006146.1 | + | 94510 | 0.74 | 0.339221 |
Target: 5'- gUCGGCGcccccGGuCCcUCCCCCGGcGCGCCc -3' miRNA: 3'- -AGUCGUu----CC-GGuAGGGGGCCuCGUGG- -5' |
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29021 | 3' | -59.5 | NC_006146.1 | + | 124845 | 0.74 | 0.35426 |
Target: 5'- gCAGCuauGGCacucgcugCGUCCCCUGGAGgGCCc -3' miRNA: 3'- aGUCGuu-CCG--------GUAGGGGGCCUCgUGG- -5' |
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29021 | 3' | -59.5 | NC_006146.1 | + | 47525 | 0.74 | 0.361954 |
Target: 5'- cCAGCcAGGUugCGgggCCCCCGGccAGCGCCa -3' miRNA: 3'- aGUCGuUCCG--GUa--GGGGGCC--UCGUGG- -5' |
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29021 | 3' | -59.5 | NC_006146.1 | + | 137752 | 0.74 | 0.331877 |
Target: 5'- cCAGCcGGGCCAcCCCCCacccggagcGGGGCAgCg -3' miRNA: 3'- aGUCGuUCCGGUaGGGGG---------CCUCGUgG- -5' |
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29021 | 3' | -59.5 | NC_006146.1 | + | 24024 | 0.73 | 0.409662 |
Target: 5'- cCGGCGAGGCguCGUCCCCCuggcGGGGUgacgcggccccgaGCCa -3' miRNA: 3'- aGUCGUUCCG--GUAGGGGG----CCUCG-------------UGG- -5' |
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29021 | 3' | -59.5 | NC_006146.1 | + | 106660 | 0.73 | 0.410503 |
Target: 5'- -uGGuCAGGGCCGUCcucuCCCCGG-GCACg -3' miRNA: 3'- agUC-GUUCCGGUAG----GGGGCCuCGUGg -5' |
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29021 | 3' | -59.5 | NC_006146.1 | + | 113523 | 0.73 | 0.410503 |
Target: 5'- --cGCGGGGCCAgCCCaCCGGcGcCACCg -3' miRNA: 3'- aguCGUUCCGGUaGGG-GGCCuC-GUGG- -5' |
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29021 | 3' | -59.5 | NC_006146.1 | + | 137696 | 0.73 | 0.402134 |
Target: 5'- cCGGCucccccuccGGCCucCCCCCGGGGUGCCc -3' miRNA: 3'- aGUCGuu-------CCGGuaGGGGGCCUCGUGG- -5' |
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29021 | 3' | -59.5 | NC_006146.1 | + | 35771 | 0.73 | 0.393874 |
Target: 5'- gCAGCGGcccGGCCAcCCCCCgccGGAGCAaacCCa -3' miRNA: 3'- aGUCGUU---CCGGUaGGGGG---CCUCGU---GG- -5' |
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29021 | 3' | -59.5 | NC_006146.1 | + | 56256 | 0.73 | 0.393874 |
Target: 5'- -aGGCGGGGCCGUCCUCggcggGGAGCgaggagGCCa -3' miRNA: 3'- agUCGUUCCGGUAGGGGg----CCUCG------UGG- -5' |
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29021 | 3' | -59.5 | NC_006146.1 | + | 104188 | 0.73 | 0.393874 |
Target: 5'- --cGCAGGGCCGUcugcgcCCCCaCGGGGCcgcaaGCCg -3' miRNA: 3'- aguCGUUCCGGUA------GGGG-GCCUCG-----UGG- -5' |
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29021 | 3' | -59.5 | NC_006146.1 | + | 71258 | 0.72 | 0.435375 |
Target: 5'- -uGGCGGGgggcggccucuacGCCuUCCUCCGGAGCAUCu -3' miRNA: 3'- agUCGUUC-------------CGGuAGGGGGCCUCGUGG- -5' |
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29021 | 3' | -59.5 | NC_006146.1 | + | 46858 | 0.72 | 0.444151 |
Target: 5'- uUCAGUAcacugGGGCCAugacgcgcaauuuUCUCCUGG-GCACCu -3' miRNA: 3'- -AGUCGU-----UCCGGU-------------AGGGGGCCuCGUGG- -5' |
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29021 | 3' | -59.5 | NC_006146.1 | + | 45664 | 0.72 | 0.462898 |
Target: 5'- cCGGCGccAGGCCAguggcUCCCCUGGAuugcuggauccuGCACg -3' miRNA: 3'- aGUCGU--UCCGGU-----AGGGGGCCU------------CGUGg -5' |
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29021 | 3' | -59.5 | NC_006146.1 | + | 43942 | 0.72 | 0.453025 |
Target: 5'- -gGGCGGGGuCUAUCCagacgcgCCCGGAgaGCGCCa -3' miRNA: 3'- agUCGUUCC-GGUAGG-------GGGCCU--CGUGG- -5' |
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29021 | 3' | -59.5 | NC_006146.1 | + | 125930 | 0.72 | 0.462898 |
Target: 5'- -gGGUccGGCCAccgcggucgagUCCCCCGGGGCcuCCc -3' miRNA: 3'- agUCGuuCCGGU-----------AGGGGGCCUCGu-GG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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