miRNA display CGI


Results 21 - 40 of 336 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29021 3' -59.5 NC_006146.1 + 169459 0.72 0.436248
Target:  5'- -aGGCcGGGCC-UCCCCUGGGG-GCCu -3'
miRNA:   3'- agUCGuUCCGGuAGGGGGCCUCgUGG- -5'
29021 3' -59.5 NC_006146.1 + 130739 0.72 0.436248
Target:  5'- gCGGC-GGGCUcUUCCCCGGAGaagaCGCCg -3'
miRNA:   3'- aGUCGuUCCGGuAGGGGGCCUC----GUGG- -5'
29021 3' -59.5 NC_006146.1 + 170666 0.74 0.34593
Target:  5'- aUCGGCGcgggggAGGCCAggggCgCCCCGGggaccgucgcgggGGCACCg -3'
miRNA:   3'- -AGUCGU------UCCGGUa---G-GGGGCC-------------UCGUGG- -5'
29021 3' -59.5 NC_006146.1 + 114219 0.81 0.121507
Target:  5'- cCAGCAGGGCCAgCCCCagGGGGC-CCg -3'
miRNA:   3'- aGUCGUUCCGGUaGGGGg-CCUCGuGG- -5'
29021 3' -59.5 NC_006146.1 + 25424 0.71 0.47197
Target:  5'- -aGGCGGGGuCCGgccUCUCCUGGGGCAgCa -3'
miRNA:   3'- agUCGUUCC-GGU---AGGGGGCCUCGUgG- -5'
29021 3' -59.5 NC_006146.1 + 154894 0.72 0.445034
Target:  5'- -gGGCAGGGCC-UCgCCCGG-GCugACCg -3'
miRNA:   3'- agUCGUUCCGGuAGgGGGCCuCG--UGG- -5'
29021 3' -59.5 NC_006146.1 + 49022 0.72 0.41898
Target:  5'- --cGCAGGG-CGUUCUCCGGGGCGCg -3'
miRNA:   3'- aguCGUUCCgGUAGGGGGCCUCGUGg -5'
29021 3' -59.5 NC_006146.1 + 106523 0.84 0.07654
Target:  5'- aCAGguGGGCgCAUCCCCUGGugGGCACCa -3'
miRNA:   3'- aGUCguUCCG-GUAGGGGGCC--UCGUGG- -5'
29021 3' -59.5 NC_006146.1 + 74748 0.72 0.445034
Target:  5'- cCAGUGA-GCCAgCCUCCGGGGgGCCa -3'
miRNA:   3'- aGUCGUUcCGGUaGGGGGCCUCgUGG- -5'
29021 3' -59.5 NC_006146.1 + 109367 0.89 0.037646
Target:  5'- aCAGCGAGGgCGUCCCCCGGA-CACCg -3'
miRNA:   3'- aGUCGUUCCgGUAGGGGGCCUcGUGG- -5'
29021 3' -59.5 NC_006146.1 + 56534 0.72 0.419834
Target:  5'- aUCAGCAgcugacgcgucacgcGGGCCAggCCCCCguccaccuccgucaGGGGCgGCCg -3'
miRNA:   3'- -AGUCGU---------------UCCGGUa-GGGGG--------------CCUCG-UGG- -5'
29021 3' -59.5 NC_006146.1 + 170390 0.72 0.436248
Target:  5'- -aGGCcGGGCC-UCCCCUGGGG-GCCu -3'
miRNA:   3'- agUCGuUCCGGuAGGGGGCCUCgUGG- -5'
29021 3' -59.5 NC_006146.1 + 104188 0.73 0.393874
Target:  5'- --cGCAGGGCCGUcugcgcCCCCaCGGGGCcgcaaGCCg -3'
miRNA:   3'- aguCGUUCCGGUA------GGGG-GCCUCG-----UGG- -5'
29021 3' -59.5 NC_006146.1 + 31448 0.74 0.346682
Target:  5'- cCAGUGcAGGCaccCCCCCGG-GCACCg -3'
miRNA:   3'- aGUCGU-UCCGguaGGGGGCCuCGUGG- -5'
29021 3' -59.5 NC_006146.1 + 69606 0.75 0.317542
Target:  5'- gCAGCGagacguccAGGCCcacgUCCCCGGGGUACUg -3'
miRNA:   3'- aGUCGU--------UCCGGua--GGGGGCCUCGUGG- -5'
29021 3' -59.5 NC_006146.1 + 70181 0.8 0.14418
Target:  5'- cCGGCGAGGCCGgucccacacccaCCCCCGcAGCGCCg -3'
miRNA:   3'- aGUCGUUCCGGUa-----------GGGGGCcUCGUGG- -5'
29021 3' -59.5 NC_006146.1 + 54929 0.71 0.490378
Target:  5'- cCGGCAguAGGCCucgacgucugCCCgCGGGGCgACCg -3'
miRNA:   3'- aGUCGU--UCCGGua--------GGGgGCCUCG-UGG- -5'
29021 3' -59.5 NC_006146.1 + 28502 0.71 0.47197
Target:  5'- -aGGCGGGGuCCGgccUCUCCUGGGGCAgCa -3'
miRNA:   3'- agUCGUUCC-GGU---AGGGGGCCUCGUgG- -5'
29021 3' -59.5 NC_006146.1 + 16190 0.71 0.47197
Target:  5'- -aGGCGGGGuCCGgccUCUCCUGGGGCAgCa -3'
miRNA:   3'- agUCGUUCC-GGU---AGGGGGCCUCGUgG- -5'
29021 3' -59.5 NC_006146.1 + 45007 0.72 0.453919
Target:  5'- cUCGGUGAGGCCccaccGUCCCUCGaGAGUgagggagagagGCCg -3'
miRNA:   3'- -AGUCGUUCCGG-----UAGGGGGC-CUCG-----------UGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.