Results 1 - 20 of 336 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29021 | 3' | -59.5 | NC_006146.1 | + | 57259 | 1.12 | 0.000919 |
Target: 5'- gUCAGCAAGGCCAUCCCCCGGAGCACCg -3' miRNA: 3'- -AGUCGUUCCGGUAGGGGGCCUCGUGG- -5' |
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29021 | 3' | -59.5 | NC_006146.1 | + | 49022 | 0.72 | 0.41898 |
Target: 5'- --cGCAGGG-CGUUCUCCGGGGCGCg -3' miRNA: 3'- aguCGUUCCgGUAGGGGGCCUCGUGg -5' |
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29021 | 3' | -59.5 | NC_006146.1 | + | 130739 | 0.72 | 0.436248 |
Target: 5'- gCGGC-GGGCUcUUCCCCGGAGaagaCGCCg -3' miRNA: 3'- aGUCGuUCCGGuAGGGGGCCUC----GUGG- -5' |
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29021 | 3' | -59.5 | NC_006146.1 | + | 137782 | 0.66 | 0.807024 |
Target: 5'- cCGGguGGGCCugGUCCgCCGGAucCGCUu -3' miRNA: 3'- aGUCguUCCGG--UAGGgGGCCUc-GUGG- -5' |
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29021 | 3' | -59.5 | NC_006146.1 | + | 70181 | 0.8 | 0.14418 |
Target: 5'- cCGGCGAGGCCGgucccacacccaCCCCCGcAGCGCCg -3' miRNA: 3'- aGUCGUUCCGGUa-----------GGGGGCcUCGUGG- -5' |
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29021 | 3' | -59.5 | NC_006146.1 | + | 167101 | 0.76 | 0.271068 |
Target: 5'- -gGGCGuGGCCAUCCCCCGcGuGCcCCc -3' miRNA: 3'- agUCGUuCCGGUAGGGGGC-CuCGuGG- -5' |
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29021 | 3' | -59.5 | NC_006146.1 | + | 69606 | 0.75 | 0.317542 |
Target: 5'- gCAGCGagacguccAGGCCcacgUCCCCGGGGUACUg -3' miRNA: 3'- aGUCGU--------UCCGGua--GGGGGCCUCGUGG- -5' |
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29021 | 3' | -59.5 | NC_006146.1 | + | 52101 | 0.74 | 0.331877 |
Target: 5'- cCGGCGAGGCCAUCuguuCCCCGucgcuGGaCACCa -3' miRNA: 3'- aGUCGUUCCGGUAG----GGGGCc----UC-GUGG- -5' |
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29021 | 3' | -59.5 | NC_006146.1 | + | 31448 | 0.74 | 0.346682 |
Target: 5'- cCAGUGcAGGCaccCCCCCGG-GCACCg -3' miRNA: 3'- aGUCGU-UCCGguaGGGGGCCuCGUGG- -5' |
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29021 | 3' | -59.5 | NC_006146.1 | + | 137696 | 0.73 | 0.402134 |
Target: 5'- cCGGCucccccuccGGCCucCCCCCGGGGUGCCc -3' miRNA: 3'- aGUCGuu-------CCGGuaGGGGGCCUCGUGG- -5' |
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29021 | 3' | -59.5 | NC_006146.1 | + | 47525 | 0.74 | 0.361954 |
Target: 5'- cCAGCcAGGUugCGgggCCCCCGGccAGCGCCa -3' miRNA: 3'- aGUCGuUCCG--GUa--GGGGGCC--UCGUGG- -5' |
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29021 | 3' | -59.5 | NC_006146.1 | + | 170666 | 0.74 | 0.34593 |
Target: 5'- aUCGGCGcgggggAGGCCAggggCgCCCCGGggaccgucgcgggGGCACCg -3' miRNA: 3'- -AGUCGU------UCCGGUa---G-GGGGCC-------------UCGUGG- -5' |
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29021 | 3' | -59.5 | NC_006146.1 | + | 109367 | 0.89 | 0.037646 |
Target: 5'- aCAGCGAGGgCGUCCCCCGGA-CACCg -3' miRNA: 3'- aGUCGUUCCgGUAGGGGGCCUcGUGG- -5' |
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29021 | 3' | -59.5 | NC_006146.1 | + | 104188 | 0.73 | 0.393874 |
Target: 5'- --cGCAGGGCCGUcugcgcCCCCaCGGGGCcgcaaGCCg -3' miRNA: 3'- aguCGUUCCGGUA------GGGG-GCCUCG-----UGG- -5' |
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29021 | 3' | -59.5 | NC_006146.1 | + | 106523 | 0.84 | 0.07654 |
Target: 5'- aCAGguGGGCgCAUCCCCUGGugGGCACCa -3' miRNA: 3'- aGUCguUCCG-GUAGGGGGCC--UCGUGG- -5' |
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29021 | 3' | -59.5 | NC_006146.1 | + | 94510 | 0.74 | 0.339221 |
Target: 5'- gUCGGCGcccccGGuCCcUCCCCCGGcGCGCCc -3' miRNA: 3'- -AGUCGUu----CC-GGuAGGGGGCCuCGUGG- -5' |
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29021 | 3' | -59.5 | NC_006146.1 | + | 56256 | 0.73 | 0.393874 |
Target: 5'- -aGGCGGGGCCGUCCUCggcggGGAGCgaggagGCCa -3' miRNA: 3'- agUCGUUCCGGUAGGGGg----CCUCG------UGG- -5' |
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29021 | 3' | -59.5 | NC_006146.1 | + | 56534 | 0.72 | 0.419834 |
Target: 5'- aUCAGCAgcugacgcgucacgcGGGCCAggCCCCCguccaccuccgucaGGGGCgGCCg -3' miRNA: 3'- -AGUCGU---------------UCCGGUa-GGGGG--------------CCUCG-UGG- -5' |
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29021 | 3' | -59.5 | NC_006146.1 | + | 114219 | 0.81 | 0.121507 |
Target: 5'- cCAGCAGGGCCAgCCCCagGGGGC-CCg -3' miRNA: 3'- aGUCGUUCCGGUaGGGGg-CCUCGuGG- -5' |
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29021 | 3' | -59.5 | NC_006146.1 | + | 139133 | 0.75 | 0.281829 |
Target: 5'- -gGGCuguGGGCCgaacgggggcucccGUCCCCCGGgggGGCGCCu -3' miRNA: 3'- agUCGu--UCCGG--------------UAGGGGGCC---UCGUGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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