Results 1 - 20 of 336 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29021 | 3' | -59.5 | NC_006146.1 | + | 127938 | 0.67 | 0.743725 |
Target: 5'- aCAGgAggagagaggauGGGCCucgucgcgggaGUCCUCCGGAGCuuggcGCCg -3' miRNA: 3'- aGUCgU-----------UCCGG-----------UAGGGGGCCUCG-----UGG- -5' |
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29021 | 3' | -59.5 | NC_006146.1 | + | 75398 | 0.66 | 0.780633 |
Target: 5'- aCAGCucccggauaugGAGGCCuucUCCCCC-GAGUuugACCc -3' miRNA: 3'- aGUCG-----------UUCCGGu--AGGGGGcCUCG---UGG- -5' |
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29021 | 3' | -59.5 | NC_006146.1 | + | 15035 | 0.66 | 0.771574 |
Target: 5'- -gGGCGccuGGCCAgggCCCgCCGGgccugcgaggaGGCACUg -3' miRNA: 3'- agUCGUu--CCGGUa--GGG-GGCC-----------UCGUGG- -5' |
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29021 | 3' | -59.5 | NC_006146.1 | + | 118248 | 0.66 | 0.762397 |
Target: 5'- -gGGCGAGGCUGgacgCCCUCau-GCGCCa -3' miRNA: 3'- agUCGUUCCGGUa---GGGGGccuCGUGG- -5' |
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29021 | 3' | -59.5 | NC_006146.1 | + | 68917 | 0.67 | 0.753111 |
Target: 5'- cUAGCAAGggaGCCAgagCCucuagccagagCCCGGAGCcCCu -3' miRNA: 3'- aGUCGUUC---CGGUa--GG-----------GGGCCUCGuGG- -5' |
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29021 | 3' | -59.5 | NC_006146.1 | + | 127723 | 0.67 | 0.753111 |
Target: 5'- gUCAGaAAGGCCAgguagCUCCCuGAGCcucCCg -3' miRNA: 3'- -AGUCgUUCCGGUa----GGGGGcCUCGu--GG- -5' |
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29021 | 3' | -59.5 | NC_006146.1 | + | 58777 | 0.67 | 0.753111 |
Target: 5'- gUCAGCAccgAGGCCA-CCaCC--AGCACCa -3' miRNA: 3'- -AGUCGU---UCCGGUaGGgGGccUCGUGG- -5' |
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29021 | 3' | -59.5 | NC_006146.1 | + | 111669 | 0.67 | 0.752177 |
Target: 5'- -aGGCccaugGAGGCCAUgUCCCUGGAGUcguaggugggggaGCCc -3' miRNA: 3'- agUCG-----UUCCGGUA-GGGGGCCUCG-------------UGG- -5' |
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29021 | 3' | -59.5 | NC_006146.1 | + | 81127 | 0.67 | 0.747491 |
Target: 5'- aCGGCcauGGGCCccucGUCCUcgauuuccgccacugCCGGAGC-CCg -3' miRNA: 3'- aGUCGu--UCCGG----UAGGG---------------GGCCUCGuGG- -5' |
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29021 | 3' | -59.5 | NC_006146.1 | + | 12077 | 0.66 | 0.789566 |
Target: 5'- --uGCgAGGGCCGggCCCCGGccguGUGCCu -3' miRNA: 3'- aguCG-UUCCGGUagGGGGCCu---CGUGG- -5' |
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29021 | 3' | -59.5 | NC_006146.1 | + | 60875 | 0.66 | 0.789566 |
Target: 5'- gUCA-CGAGGCCAUCUUUgaucaggaCGGAGC-CCu -3' miRNA: 3'- -AGUcGUUCCGGUAGGGG--------GCCUCGuGG- -5' |
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29021 | 3' | -59.5 | NC_006146.1 | + | 207 | 0.66 | 0.789566 |
Target: 5'- --cGCcGGuGCCcccgcgacggUCCCCGGGGCGCCc -3' miRNA: 3'- aguCGuUC-CGGua--------GGGGGCCUCGUGG- -5' |
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29021 | 3' | -59.5 | NC_006146.1 | + | 90098 | 0.66 | 0.801847 |
Target: 5'- -aGGCcguaaaugaaaaugaGGGGCC-UCCUCUGGGGUAUCu -3' miRNA: 3'- agUCG---------------UUCCGGuAGGGGGCCUCGUGG- -5' |
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29021 | 3' | -59.5 | NC_006146.1 | + | 3019 | 0.66 | 0.798366 |
Target: 5'- -gGGUccccGGGCCGccccggggcUCCCCCGcgccgaucuGAGCGCCc -3' miRNA: 3'- agUCGu---UCCGGU---------AGGGGGC---------CUCGUGG- -5' |
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29021 | 3' | -59.5 | NC_006146.1 | + | 2087 | 0.66 | 0.798366 |
Target: 5'- -gGGUccccGGGCCGccccggggcUCCCCCGcgccgaucuGAGCGCCc -3' miRNA: 3'- agUCGu---UCCGGU---------AGGGGGC---------CUCGUGG- -5' |
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29021 | 3' | -59.5 | NC_006146.1 | + | 1155 | 0.66 | 0.798366 |
Target: 5'- -gGGUccccGGGCCGccccggggcUCCCCCGcgccgaucuGAGCGCCc -3' miRNA: 3'- agUCGu---UCCGGU---------AGGGGGC---------CUCGUGG- -5' |
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29021 | 3' | -59.5 | NC_006146.1 | + | 42068 | 0.66 | 0.798366 |
Target: 5'- -uGGCcGGGCUuaccugCUCCUGGAccGCGCCg -3' miRNA: 3'- agUCGuUCCGGua----GGGGGCCU--CGUGG- -5' |
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29021 | 3' | -59.5 | NC_006146.1 | + | 17488 | 0.66 | 0.798366 |
Target: 5'- cCAGCcacaCCcgCCCCCGGgaacucccuuGGCACCc -3' miRNA: 3'- aGUCGuuccGGuaGGGGGCC----------UCGUGG- -5' |
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29021 | 3' | -59.5 | NC_006146.1 | + | 98311 | 0.66 | 0.789566 |
Target: 5'- --uGCGAGuGCCGggguucuaaCCCCGGcaagccccAGCACCa -3' miRNA: 3'- aguCGUUC-CGGUag-------GGGGCC--------UCGUGG- -5' |
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29021 | 3' | -59.5 | NC_006146.1 | + | 123702 | 0.66 | 0.789566 |
Target: 5'- gCGGCcaGGGGCCuggCgCUCGGGGCGgCg -3' miRNA: 3'- aGUCG--UUCCGGua-GgGGGCCUCGUgG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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