miRNA display CGI


Results 1 - 20 of 336 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29021 3' -59.5 NC_006146.1 + 57259 1.12 0.000919
Target:  5'- gUCAGCAAGGCCAUCCCCCGGAGCACCg -3'
miRNA:   3'- -AGUCGUUCCGGUAGGGGGCCUCGUGG- -5'
29021 3' -59.5 NC_006146.1 + 109367 0.89 0.037646
Target:  5'- aCAGCGAGGgCGUCCCCCGGA-CACCg -3'
miRNA:   3'- aGUCGUUCCgGUAGGGGGCCUcGUGG- -5'
29021 3' -59.5 NC_006146.1 + 117978 0.86 0.058954
Target:  5'- gCGGaCGAGGCCAgcgCCCCCGGGGgGCCa -3'
miRNA:   3'- aGUC-GUUCCGGUa--GGGGGCCUCgUGG- -5'
29021 3' -59.5 NC_006146.1 + 106523 0.84 0.07654
Target:  5'- aCAGguGGGCgCAUCCCCUGGugGGCACCa -3'
miRNA:   3'- aGUCguUCCG-GUAGGGGGCC--UCGUGG- -5'
29021 3' -59.5 NC_006146.1 + 114219 0.81 0.121507
Target:  5'- cCAGCAGGGCCAgCCCCagGGGGC-CCg -3'
miRNA:   3'- aGUCGUUCCGGUaGGGGg-CCUCGuGG- -5'
29021 3' -59.5 NC_006146.1 + 70181 0.8 0.14418
Target:  5'- cCGGCGAGGCCGgucccacacccaCCCCCGcAGCGCCg -3'
miRNA:   3'- aGUCGUUCCGGUa-----------GGGGGCcUCGUGG- -5'
29021 3' -59.5 NC_006146.1 + 107814 0.79 0.176623
Target:  5'- uUCAGCGAGGCCAccgcauguucCCCCCGaGAGCAg- -3'
miRNA:   3'- -AGUCGUUCCGGUa---------GGGGGC-CUCGUgg -5'
29021 3' -59.5 NC_006146.1 + 137679 0.78 0.185466
Target:  5'- cCGGC--GGCCAcccggcUgCCCCGGAGCACCa -3'
miRNA:   3'- aGUCGuuCCGGU------AgGGGGCCUCGUGG- -5'
29021 3' -59.5 NC_006146.1 + 137557 0.77 0.230224
Target:  5'- cCGGC--GGCCAcccggcUgCCCCGGAGCACCc -3'
miRNA:   3'- aGUCGuuCCGGU------AgGGGGCCUCGUGG- -5'
29021 3' -59.5 NC_006146.1 + 157974 0.77 0.241335
Target:  5'- -gGGCGGGGCCAgggCCUCCaGAGgCACCa -3'
miRNA:   3'- agUCGUUCCGGUa--GGGGGcCUC-GUGG- -5'
29021 3' -59.5 NC_006146.1 + 154896 0.77 0.241335
Target:  5'- -gGGCGGGGCCAgggCCUCCaGAGgCACCa -3'
miRNA:   3'- agUCGUUCCGGUa--GGGGGcCUC-GUGG- -5'
29021 3' -59.5 NC_006146.1 + 151818 0.77 0.241335
Target:  5'- -gGGCGGGGCCAgggCCUCCaGAGgCACCa -3'
miRNA:   3'- agUCGUUCCGGUa--GGGGGcCUC-GUGG- -5'
29021 3' -59.5 NC_006146.1 + 142585 0.77 0.241335
Target:  5'- -gGGCGGGGCCAgggCCUCCaGAGgCACCa -3'
miRNA:   3'- agUCGUUCCGGUa--GGGGGcCUC-GUGG- -5'
29021 3' -59.5 NC_006146.1 + 145663 0.77 0.241335
Target:  5'- -gGGCGGGGCCAgggCCUCCaGAGgCACCa -3'
miRNA:   3'- agUCGUUCCGGUa--GGGGGcCUC-GUGG- -5'
29021 3' -59.5 NC_006146.1 + 148740 0.77 0.241335
Target:  5'- -gGGCGGGGCCAgggCCUCCaGAGgCACCa -3'
miRNA:   3'- agUCGUUCCGGUa--GGGGGcCUC-GUGG- -5'
29021 3' -59.5 NC_006146.1 + 167101 0.76 0.271068
Target:  5'- -gGGCGuGGCCAUCCCCCGcGuGCcCCc -3'
miRNA:   3'- agUCGUuCCGGUAGGGGGC-CuCGuGG- -5'
29021 3' -59.5 NC_006146.1 + 139133 0.75 0.281829
Target:  5'- -gGGCuguGGGCCgaacgggggcucccGUCCCCCGGgggGGCGCCu -3'
miRNA:   3'- agUCGu--UCCGG--------------UAGGGGGCC---UCGUGG- -5'
29021 3' -59.5 NC_006146.1 + 137333 0.75 0.296922
Target:  5'- cCAGCGAacgcGGCgA-CCCCCGGAggaGCACCa -3'
miRNA:   3'- aGUCGUU----CCGgUaGGGGGCCU---CGUGG- -5'
29021 3' -59.5 NC_006146.1 + 69606 0.75 0.317542
Target:  5'- gCAGCGagacguccAGGCCcacgUCCCCGGGGUACUg -3'
miRNA:   3'- aGUCGU--------UCCGGua--GGGGGCCUCGUGG- -5'
29021 3' -59.5 NC_006146.1 + 137629 0.74 0.331877
Target:  5'- cCAGCcGGGCCAcCCCCCacccggagcGGGGCAgCg -3'
miRNA:   3'- aGUCGuUCCGGUaGGGGG---------CCUCGUgG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.