miRNA display CGI


Results 21 - 40 of 336 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29021 3' -59.5 NC_006146.1 + 12077 0.66 0.789566
Target:  5'- --uGCgAGGGCCGggCCCCGGccguGUGCCu -3'
miRNA:   3'- aguCG-UUCCGGUagGGGGCCu---CGUGG- -5'
29021 3' -59.5 NC_006146.1 + 12638 0.69 0.616342
Target:  5'- -gGGCuGGGCCAgagUCCCCCcGAGUggcucaaggGCCa -3'
miRNA:   3'- agUCGuUCCGGU---AGGGGGcCUCG---------UGG- -5'
29021 3' -59.5 NC_006146.1 + 13112 0.71 0.47197
Target:  5'- -aGGCGGGGuCCGgccUCUCCUGGGGCAgCa -3'
miRNA:   3'- agUCGUUCC-GGU---AGGGGGCCUCGUgG- -5'
29021 3' -59.5 NC_006146.1 + 13360 0.69 0.596498
Target:  5'- gUCAGagGGGaGCCG-CCCUCGGGGC-CCa -3'
miRNA:   3'- -AGUCg-UUC-CGGUaGGGGGCCUCGuGG- -5'
29021 3' -59.5 NC_006146.1 + 14175 0.7 0.528143
Target:  5'- gUCuGCGccAGGCUGgaCCCCCGGAGC-CUg -3'
miRNA:   3'- -AGuCGU--UCCGGUa-GGGGGCCUCGuGG- -5'
29021 3' -59.5 NC_006146.1 + 14521 0.68 0.692639
Target:  5'- aCAGCAugGGGCUggagagccuggaccGggCCCUGGAGCugCu -3'
miRNA:   3'- aGUCGU--UCCGG--------------UagGGGGCCUCGugG- -5'
29021 3' -59.5 NC_006146.1 + 15035 0.66 0.771574
Target:  5'- -gGGCGccuGGCCAgggCCCgCCGGgccugcgaggaGGCACUg -3'
miRNA:   3'- agUCGUu--CCGGUa--GGG-GGCC-----------UCGUGG- -5'
29021 3' -59.5 NC_006146.1 + 15311 0.71 0.47197
Target:  5'- -gGGCcgGAGGCCAg-CCCCGGuGUGCCc -3'
miRNA:   3'- agUCG--UUCCGGUagGGGGCCuCGUGG- -5'
29021 3' -59.5 NC_006146.1 + 16017 0.7 0.537756
Target:  5'- -gGGCGAGGCCcugcCCCCCGacGGGCucuACCu -3'
miRNA:   3'- agUCGUUCCGGua--GGGGGC--CUCG---UGG- -5'
29021 3' -59.5 NC_006146.1 + 16190 0.71 0.47197
Target:  5'- -aGGCGGGGuCCGgccUCUCCUGGGGCAgCa -3'
miRNA:   3'- agUCGUUCC-GGU---AGGGGGCCUCGUgG- -5'
29021 3' -59.5 NC_006146.1 + 16438 0.69 0.596498
Target:  5'- gUCAGagGGGaGCCG-CCCUCGGGGC-CCa -3'
miRNA:   3'- -AGUCg-UUC-CGGUaGGGGGCCUCGuGG- -5'
29021 3' -59.5 NC_006146.1 + 17488 0.66 0.798366
Target:  5'- cCAGCcacaCCcgCCCCCGGgaacucccuuGGCACCc -3'
miRNA:   3'- aGUCGuuccGGuaGGGGGCC----------UCGUGG- -5'
29021 3' -59.5 NC_006146.1 + 18985 0.71 0.490378
Target:  5'- gCGGCAGGGCCGgagccagaCCCCagugGGGGCcCCc -3'
miRNA:   3'- aGUCGUUCCGGUa-------GGGGg---CCUCGuGG- -5'
29021 3' -59.5 NC_006146.1 + 19268 0.71 0.47197
Target:  5'- -aGGCGGGGuCCGgccUCUCCUGGGGCAgCa -3'
miRNA:   3'- agUCGUUCC-GGU---AGGGGGCCUCGUgG- -5'
29021 3' -59.5 NC_006146.1 + 19499 0.67 0.724684
Target:  5'- aCAGCugccgccGcGCCAUCCCCCGccuGCAgCa -3'
miRNA:   3'- aGUCGuu-----C-CGGUAGGGGGCcu-CGUgG- -5'
29021 3' -59.5 NC_006146.1 + 19516 0.69 0.596498
Target:  5'- gUCAGagGGGaGCCG-CCCUCGGGGC-CCa -3'
miRNA:   3'- -AGUCg-UUC-CGGUaGGGGGCCUCGuGG- -5'
29021 3' -59.5 NC_006146.1 + 22346 0.71 0.47197
Target:  5'- -aGGCGGGGuCCGgccUCUCCUGGGGCAgCa -3'
miRNA:   3'- agUCGUUCC-GGU---AGGGGGCCUCGUgG- -5'
29021 3' -59.5 NC_006146.1 + 22594 0.69 0.596498
Target:  5'- gUCAGagGGGaGCCG-CCCUCGGGGC-CCa -3'
miRNA:   3'- -AGUCg-UUC-CGGUaGGGGGCCUCGuGG- -5'
29021 3' -59.5 NC_006146.1 + 24024 0.73 0.409662
Target:  5'- cCGGCGAGGCguCGUCCCCCuggcGGGGUgacgcggccccgaGCCa -3'
miRNA:   3'- aGUCGUUCCG--GUAGGGGG----CCUCG-------------UGG- -5'
29021 3' -59.5 NC_006146.1 + 24372 0.68 0.666021
Target:  5'- --cGCAGGGCCAgCUCCaGGgcgcGGCGCCu -3'
miRNA:   3'- aguCGUUCCGGUaGGGGgCC----UCGUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.