miRNA display CGI


Results 21 - 40 of 336 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29021 3' -59.5 NC_006146.1 + 158827 0.66 0.762397
Target:  5'- aCGGcCGGGGCCcggCCCUCGcaaagcGAGCACa -3'
miRNA:   3'- aGUC-GUUCCGGua-GGGGGC------CUCGUGg -5'
29021 3' -59.5 NC_006146.1 + 158641 0.69 0.616342
Target:  5'- gUAGCGGGGCuCAUCgUCCGGccucuGCGCg -3'
miRNA:   3'- aGUCGUUCCG-GUAGgGGGCCu----CGUGg -5'
29021 3' -59.5 NC_006146.1 + 157974 0.77 0.241335
Target:  5'- -gGGCGGGGCCAgggCCUCCaGAGgCACCa -3'
miRNA:   3'- agUCGUUCCGGUa--GGGGGcCUC-GUGG- -5'
29021 3' -59.5 NC_006146.1 + 157153 0.69 0.626284
Target:  5'- -aGGUAAGGCgGcUCUCCCGG-GCuGCCg -3'
miRNA:   3'- agUCGUUCCGgU-AGGGGGCCuCG-UGG- -5'
29021 3' -59.5 NC_006146.1 + 156563 0.68 0.685765
Target:  5'- cCAGCAGGGCCGcaacggCCCUgCGuGAGUucuCCa -3'
miRNA:   3'- aGUCGUUCCGGUa-----GGGG-GC-CUCGu--GG- -5'
29021 3' -59.5 NC_006146.1 + 155569 0.66 0.798366
Target:  5'- cUCGcGCGGGGCg--CCCgCCaGGGGCACa -3'
miRNA:   3'- -AGU-CGUUCCGguaGGG-GG-CCUCGUGg -5'
29021 3' -59.5 NC_006146.1 + 155484 0.68 0.666021
Target:  5'- gCAGCcGGGCCAgCCCCuCuGAGgcCACCu -3'
miRNA:   3'- aGUCGuUCCGGUaGGGG-GcCUC--GUGG- -5'
29021 3' -59.5 NC_006146.1 + 155393 0.67 0.705341
Target:  5'- -aGGC-AGGCCAUCUCCCaGuaCACCa -3'
miRNA:   3'- agUCGuUCCGGUAGGGGGcCucGUGG- -5'
29021 3' -59.5 NC_006146.1 + 154896 0.77 0.241335
Target:  5'- -gGGCGGGGCCAgggCCUCCaGAGgCACCa -3'
miRNA:   3'- agUCGUUCCGGUa--GGGGGcCUC-GUGG- -5'
29021 3' -59.5 NC_006146.1 + 154894 0.72 0.445034
Target:  5'- -gGGCAGGGCC-UCgCCCGG-GCugACCg -3'
miRNA:   3'- agUCGUUCCGGuAGgGGGCCuCG--UGG- -5'
29021 3' -59.5 NC_006146.1 + 154075 0.69 0.626284
Target:  5'- -aGGUAAGGCgGcUCUCCCGG-GCuGCCg -3'
miRNA:   3'- agUCGUUCCGgU-AGGGGGCCuCG-UGG- -5'
29021 3' -59.5 NC_006146.1 + 153942 0.67 0.743725
Target:  5'- cCAGgAAGGCCcgCcgcuCCCCGuuGGGCACg -3'
miRNA:   3'- aGUCgUUCCGGuaG----GGGGC--CUCGUGg -5'
29021 3' -59.5 NC_006146.1 + 152032 0.68 0.694599
Target:  5'- -gGGCuGAGGCCcccgcacGUCcaccaCCCCGGcAGCGCCc -3'
miRNA:   3'- agUCG-UUCCGG-------UAG-----GGGGCC-UCGUGG- -5'
29021 3' -59.5 NC_006146.1 + 151818 0.77 0.241335
Target:  5'- -gGGCGGGGCCAgggCCUCCaGAGgCACCa -3'
miRNA:   3'- agUCGUUCCGGUa--GGGGGcCUC-GUGG- -5'
29021 3' -59.5 NC_006146.1 + 151167 0.66 0.7869
Target:  5'- gUCAGCAGgaugcggcgguagcGGCCGgccuccUCCCCCGu-GgACCa -3'
miRNA:   3'- -AGUCGUU--------------CCGGU------AGGGGGCcuCgUGG- -5'
29021 3' -59.5 NC_006146.1 + 150997 0.69 0.626284
Target:  5'- -aGGUAAGGCgGcUCUCCCGG-GCuGCCg -3'
miRNA:   3'- agUCGUUCCGgU-AGGGGGCCuCG-UGG- -5'
29021 3' -59.5 NC_006146.1 + 148740 0.77 0.241335
Target:  5'- -gGGCGGGGCCAgggCCUCCaGAGgCACCa -3'
miRNA:   3'- agUCGUUCCGGUa--GGGGGcCUC-GUGG- -5'
29021 3' -59.5 NC_006146.1 + 147919 0.69 0.626284
Target:  5'- -aGGUAAGGCgGcUCUCCCGG-GCuGCCg -3'
miRNA:   3'- agUCGUUCCGgU-AGGGGGCCuCG-UGG- -5'
29021 3' -59.5 NC_006146.1 + 146521 0.67 0.724684
Target:  5'- -gAGCgAAGGCgCcgCgCCCUGGAGCugGCCc -3'
miRNA:   3'- agUCG-UUCCG-GuaG-GGGGCCUCG--UGG- -5'
29021 3' -59.5 NC_006146.1 + 145663 0.77 0.241335
Target:  5'- -gGGCGGGGCCAgggCCUCCaGAGgCACCa -3'
miRNA:   3'- agUCGUUCCGGUa--GGGGGcCUC-GUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.