miRNA display CGI


Results 1 - 20 of 336 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29021 3' -59.5 NC_006146.1 + 170666 0.74 0.34593
Target:  5'- aUCGGCGcgggggAGGCCAggggCgCCCCGGggaccgucgcgggGGCACCg -3'
miRNA:   3'- -AGUCGU------UCCGGUa---G-GGGGCC-------------UCGUGG- -5'
29021 3' -59.5 NC_006146.1 + 170608 0.69 0.616342
Target:  5'- -gAGCGcgccGGGCCcgCCCCCGGgucuucccgGGCuCCc -3'
miRNA:   3'- agUCGU----UCCGGuaGGGGGCC---------UCGuGG- -5'
29021 3' -59.5 NC_006146.1 + 170390 0.72 0.436248
Target:  5'- -aGGCcGGGCC-UCCCCUGGGG-GCCu -3'
miRNA:   3'- agUCGuUCCGGuAGGGGGCCUCgUGG- -5'
29021 3' -59.5 NC_006146.1 + 169976 0.66 0.780633
Target:  5'- aCGG-GAGGCCGgcgcgCgCCCGGGGUcCCg -3'
miRNA:   3'- aGUCgUUCCGGUa----GgGGGCCUCGuGG- -5'
29021 3' -59.5 NC_006146.1 + 169681 0.67 0.743725
Target:  5'- --cGCGuGGCCcgCCCCCGGgucuucccgGGCuCCc -3'
miRNA:   3'- aguCGUuCCGGuaGGGGGCC---------UCGuGG- -5'
29021 3' -59.5 NC_006146.1 + 169560 0.7 0.557157
Target:  5'- -gAGCGggGGGCU--UCCCCGGGGC-CCg -3'
miRNA:   3'- agUCGU--UCCGGuaGGGGGCCUCGuGG- -5'
29021 3' -59.5 NC_006146.1 + 169459 0.72 0.436248
Target:  5'- -aGGCcGGGCC-UCCCCUGGGG-GCCu -3'
miRNA:   3'- agUCGuUCCGGuAGGGGGCCUCgUGG- -5'
29021 3' -59.5 NC_006146.1 + 169044 0.66 0.780633
Target:  5'- aCGG-GAGGCCGgcgcgCgCCCGGGGUcCCg -3'
miRNA:   3'- aGUCgUUCCGGUa----GgGGGCCUCGuGG- -5'
29021 3' -59.5 NC_006146.1 + 168749 0.67 0.743725
Target:  5'- --cGCGuGGCCcgCCCCCGGgucuucccgGGCuCCc -3'
miRNA:   3'- aguCGUuCCGGuaGGGGGCC---------UCGuGG- -5'
29021 3' -59.5 NC_006146.1 + 168628 0.7 0.557157
Target:  5'- -gAGCGggGGGCU--UCCCCGGGGC-CCg -3'
miRNA:   3'- agUCGU--UCCGGuaGGGGGCCUCGuGG- -5'
29021 3' -59.5 NC_006146.1 + 168527 0.72 0.436248
Target:  5'- -aGGCcGGGCC-UCCCCUGGGG-GCCu -3'
miRNA:   3'- agUCGuUCCGGuAGGGGGCCUCgUGG- -5'
29021 3' -59.5 NC_006146.1 + 168112 0.66 0.780633
Target:  5'- aCGG-GAGGCCGgcgcgCgCCCGGGGUcCCg -3'
miRNA:   3'- aGUCgUUCCGGUa----GgGGGCCUCGuGG- -5'
29021 3' -59.5 NC_006146.1 + 167817 0.67 0.743725
Target:  5'- --cGCGuGGCCcgCCCCCGGgucuucccgGGCuCCc -3'
miRNA:   3'- aguCGUuCCGGuaGGGGGCC---------UCGuGG- -5'
29021 3' -59.5 NC_006146.1 + 167695 0.7 0.557157
Target:  5'- -gAGCGggGGGCU--UCCCCGGGGC-CCg -3'
miRNA:   3'- agUCGU--UCCGGuaGGGGGCCUCGuGG- -5'
29021 3' -59.5 NC_006146.1 + 167595 0.72 0.436248
Target:  5'- -aGGCcGGGCC-UCCCCUGGGG-GCCu -3'
miRNA:   3'- agUCGuUCCGGuAGGGGGCCUCgUGG- -5'
29021 3' -59.5 NC_006146.1 + 167180 0.66 0.780633
Target:  5'- aCGG-GAGGCCGgcgcgCgCCCGGGGUcCCg -3'
miRNA:   3'- aGUCgUUCCGGUa----GgGGGCCUCGuGG- -5'
29021 3' -59.5 NC_006146.1 + 167101 0.76 0.271068
Target:  5'- -gGGCGuGGCCAUCCCCCGcGuGCcCCc -3'
miRNA:   3'- agUCGUuCCGGUAGGGGGC-CuCGuGG- -5'
29021 3' -59.5 NC_006146.1 + 165947 0.7 0.566933
Target:  5'- -aGGCucucguGGCCccuggUCCCCGGGGCACa -3'
miRNA:   3'- agUCGuu----CCGGua---GGGGGCCUCGUGg -5'
29021 3' -59.5 NC_006146.1 + 165497 0.67 0.73234
Target:  5'- cCAGCAGGGCaggacgcagCCCCGGA-UGCCa -3'
miRNA:   3'- aGUCGUUCCGguag-----GGGGCCUcGUGG- -5'
29021 3' -59.5 NC_006146.1 + 159895 0.71 0.499707
Target:  5'- -gGGCcucGAGGCCGgggCCCUCgaagauggGGGGCACCa -3'
miRNA:   3'- agUCG---UUCCGGUa--GGGGG--------CCUCGUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.