miRNA display CGI


Results 41 - 60 of 336 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29021 3' -59.5 NC_006146.1 + 34074 0.66 0.780633
Target:  5'- -uGGCAcgGGGCCggggGUCCCggGGGGCAgCCg -3'
miRNA:   3'- agUCGU--UCCGG----UAGGGggCCUCGU-GG- -5'
29021 3' -59.5 NC_006146.1 + 59725 0.66 0.788679
Target:  5'- gUCGG-GGGGCgCAUCUCUCGccuccccGAGCGCCu -3'
miRNA:   3'- -AGUCgUUCCG-GUAGGGGGC-------CUCGUGG- -5'
29021 3' -59.5 NC_006146.1 + 167180 0.66 0.780633
Target:  5'- aCGG-GAGGCCGgcgcgCgCCCGGGGUcCCg -3'
miRNA:   3'- aGUCgUUCCGGUa----GgGGGCCUCGuGG- -5'
29021 3' -59.5 NC_006146.1 + 32996 0.66 0.789566
Target:  5'- uUCAGUGccGCCGcuaCCCCCGGGGgAUg -3'
miRNA:   3'- -AGUCGUucCGGUa--GGGGGCCUCgUGg -5'
29021 3' -59.5 NC_006146.1 + 60003 0.66 0.780633
Target:  5'- --uGCAAGGCCAacgcggccccgUCCCCGccuGCGCCc -3'
miRNA:   3'- aguCGUUCCGGUa----------GGGGGCcu-CGUGG- -5'
29021 3' -59.5 NC_006146.1 + 85915 0.66 0.779733
Target:  5'- --cGCGGGGCUuuaCCCUGGGGCcuggaugGCCu -3'
miRNA:   3'- aguCGUUCCGGuagGGGGCCUCG-------UGG- -5'
29021 3' -59.5 NC_006146.1 + 41249 0.66 0.762397
Target:  5'- -aAGCGcucucGCCAUUCCCgggCGGAGCACg -3'
miRNA:   3'- agUCGUuc---CGGUAGGGG---GCCUCGUGg -5'
29021 3' -59.5 NC_006146.1 + 119254 0.66 0.771574
Target:  5'- cCGGCccuGGCCcccugggaGUCCagagCCUGGAGCACa -3'
miRNA:   3'- aGUCGuu-CCGG--------UAGG----GGGCCUCGUGg -5'
29021 3' -59.5 NC_006146.1 + 135928 0.67 0.743725
Target:  5'- -gGGCcgGGGGCCGggugCCCCUGGGuccGCugCc -3'
miRNA:   3'- agUCG--UUCCGGUa---GGGGGCCU---CGugG- -5'
29021 3' -59.5 NC_006146.1 + 135185 0.67 0.743725
Target:  5'- -gGGCcgGGGGCCGggugCCCCUGGGuccGCugCc -3'
miRNA:   3'- agUCG--UUCCGGUa---GGGGGCCU---CGugG- -5'
29021 3' -59.5 NC_006146.1 + 1652 0.67 0.743725
Target:  5'- cCGGCcccgcccucGGGaGCCcccucagCCCCCGGccGGCGCCg -3'
miRNA:   3'- aGUCG---------UUC-CGGua-----GGGGGCC--UCGUGG- -5'
29021 3' -59.5 NC_006146.1 + 135835 0.67 0.743725
Target:  5'- -gGGCcgGGGGCCGggugCCCCUGGGuccGCugCc -3'
miRNA:   3'- agUCG--UUCCGGUa---GGGGGCCU---CGugG- -5'
29021 3' -59.5 NC_006146.1 + 135742 0.67 0.743725
Target:  5'- -gGGCcgGGGGCCGggugCCCCUGGGuccGCugCc -3'
miRNA:   3'- agUCG--UUCCGGUa---GGGGGCCU---CGugG- -5'
29021 3' -59.5 NC_006146.1 + 721 0.67 0.743725
Target:  5'- cCGGCcccgcccucGGGaGCCcccucagCCCCCGGccGGCGCCg -3'
miRNA:   3'- aGUCG---------UUC-CGGua-----GGGGGCC--UCGUGG- -5'
29021 3' -59.5 NC_006146.1 + 30203 0.67 0.743725
Target:  5'- aCAGCcagAGGGCCGcugcgCCCgCCGG-GCugGCCg -3'
miRNA:   3'- aGUCG---UUCCGGUa----GGG-GGCCuCG--UGG- -5'
29021 3' -59.5 NC_006146.1 + 42716 0.67 0.742781
Target:  5'- gCGGCGccccccuGGGCCGcCUCCCGGcgucgcuGCAUCg -3'
miRNA:   3'- aGUCGU-------UCCGGUaGGGGGCCu------CGUGG- -5'
29021 3' -59.5 NC_006146.1 + 126630 0.67 0.734246
Target:  5'- gUCGGU-GGGCaca-CCCCGGGGC-CCg -3'
miRNA:   3'- -AGUCGuUCCGguagGGGGCCUCGuGG- -5'
29021 3' -59.5 NC_006146.1 + 135557 0.67 0.743725
Target:  5'- -gGGCcgGGGGCCGggugCCCCUGGGuccGCugCc -3'
miRNA:   3'- agUCG--UUCCGGUa---GGGGGCCU---CGugG- -5'
29021 3' -59.5 NC_006146.1 + 135464 0.67 0.743725
Target:  5'- -gGGCcgGGGGCCGggugCCCCUGGGuccGCugCc -3'
miRNA:   3'- agUCG--UUCCGGUa---GGGGGCCU---CGugG- -5'
29021 3' -59.5 NC_006146.1 + 165497 0.67 0.73234
Target:  5'- cCAGCAGGGCaggacgcagCCCCGGA-UGCCa -3'
miRNA:   3'- aGUCGUUCCGguag-----GGGGCCUcGUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.