miRNA display CGI


Results 41 - 60 of 336 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29021 3' -59.5 NC_006146.1 + 137907 0.66 0.771574
Target:  5'- -uGGaCAGGGCCGggggUUCCgGGGGCAgCCg -3'
miRNA:   3'- agUC-GUUCCGGUa---GGGGgCCUCGU-GG- -5'
29021 3' -59.5 NC_006146.1 + 119254 0.66 0.771574
Target:  5'- cCGGCccuGGCCcccugggaGUCCagagCCUGGAGCACa -3'
miRNA:   3'- aGUCGuu-CCGG--------UAGG----GGGCCUCGUGg -5'
29021 3' -59.5 NC_006146.1 + 15035 0.66 0.771574
Target:  5'- -gGGCGccuGGCCAgggCCCgCCGGgccugcgaggaGGCACUg -3'
miRNA:   3'- agUCGUu--CCGGUa--GGG-GGCC-----------UCGUGG- -5'
29021 3' -59.5 NC_006146.1 + 102667 0.66 0.762397
Target:  5'- gUCAGCcgcGCC-UCCCCCGcuGUGCCg -3'
miRNA:   3'- -AGUCGuucCGGuAGGGGGCcuCGUGG- -5'
29021 3' -59.5 NC_006146.1 + 158827 0.66 0.762397
Target:  5'- aCGGcCGGGGCCcggCCCUCGcaaagcGAGCACa -3'
miRNA:   3'- aGUC-GUUCCGGua-GGGGGC------CUCGUGg -5'
29021 3' -59.5 NC_006146.1 + 41249 0.66 0.762397
Target:  5'- -aAGCGcucucGCCAUUCCCgggCGGAGCACg -3'
miRNA:   3'- agUCGUuc---CGGUAGGGG---GCCUCGUGg -5'
29021 3' -59.5 NC_006146.1 + 118248 0.66 0.762397
Target:  5'- -gGGCGAGGCUGgacgCCCUCau-GCGCCa -3'
miRNA:   3'- agUCGUUCCGGUa---GGGGGccuCGUGG- -5'
29021 3' -59.5 NC_006146.1 + 33192 0.66 0.759623
Target:  5'- cUCGGUccuGGGCCuccgggugcuccugGUgCUCCGGGGCAgCCg -3'
miRNA:   3'- -AGUCGu--UCCGG--------------UAgGGGGCCUCGU-GG- -5'
29021 3' -59.5 NC_006146.1 + 68917 0.67 0.753111
Target:  5'- cUAGCAAGggaGCCAgagCCucuagccagagCCCGGAGCcCCu -3'
miRNA:   3'- aGUCGUUC---CGGUa--GG-----------GGGCCUCGuGG- -5'
29021 3' -59.5 NC_006146.1 + 78873 0.67 0.753111
Target:  5'- gCAGCAgccccaggccGGGCCcgCCCCCc-AGCAgCa -3'
miRNA:   3'- aGUCGU----------UCCGGuaGGGGGccUCGUgG- -5'
29021 3' -59.5 NC_006146.1 + 34696 0.67 0.753111
Target:  5'- uUCAGCuAGGU--UCCUaCUGGGGUACCc -3'
miRNA:   3'- -AGUCGuUCCGguAGGG-GGCCUCGUGG- -5'
29021 3' -59.5 NC_006146.1 + 127723 0.67 0.753111
Target:  5'- gUCAGaAAGGCCAgguagCUCCCuGAGCcucCCg -3'
miRNA:   3'- -AGUCgUUCCGGUa----GGGGGcCUCGu--GG- -5'
29021 3' -59.5 NC_006146.1 + 58777 0.67 0.753111
Target:  5'- gUCAGCAccgAGGCCA-CCaCC--AGCACCa -3'
miRNA:   3'- -AGUCGU---UCCGGUaGGgGGccUCGUGG- -5'
29021 3' -59.5 NC_006146.1 + 78695 0.67 0.753111
Target:  5'- gCAGCAgccccaggccGGGCCcgCCCCCc-AGCAgCa -3'
miRNA:   3'- aGUCGU----------UCCGGuaGGGGGccUCGUgG- -5'
29021 3' -59.5 NC_006146.1 + 113010 0.67 0.753111
Target:  5'- -uGGaCAAGGCgCcguUCCaCCCGGcugucGGCACCg -3'
miRNA:   3'- agUC-GUUCCG-Gu--AGG-GGGCC-----UCGUGG- -5'
29021 3' -59.5 NC_006146.1 + 78755 0.67 0.753111
Target:  5'- gCAGCAgccccaggccGGGCCcgCCCCCc-AGCAgCa -3'
miRNA:   3'- aGUCGU----------UCCGGuaGGGGGccUCGUgG- -5'
29021 3' -59.5 NC_006146.1 + 111669 0.67 0.752177
Target:  5'- -aGGCccaugGAGGCCAUgUCCCUGGAGUcguaggugggggaGCCc -3'
miRNA:   3'- agUCG-----UUCCGGUA-GGGGGCCUCG-------------UGG- -5'
29021 3' -59.5 NC_006146.1 + 81127 0.67 0.747491
Target:  5'- aCGGCcauGGGCCccucGUCCUcgauuuccgccacugCCGGAGC-CCg -3'
miRNA:   3'- aGUCGu--UCCGG----UAGGG---------------GGCCUCGuGG- -5'
29021 3' -59.5 NC_006146.1 + 71156 0.67 0.743725
Target:  5'- -uGGCcucuuccgauGGGuCCGcgUCCUCGGAGCACCg -3'
miRNA:   3'- agUCGu---------UCC-GGUa-GGGGGCCUCGUGG- -5'
29021 3' -59.5 NC_006146.1 + 135557 0.67 0.743725
Target:  5'- -gGGCcgGGGGCCGggugCCCCUGGGuccGCugCc -3'
miRNA:   3'- agUCG--UUCCGGUa---GGGGGCCU---CGugG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.