miRNA display CGI


Results 61 - 80 of 336 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29021 3' -59.5 NC_006146.1 + 136300 0.67 0.743725
Target:  5'- -gGGCcgGGGGCCGggugCCCCUGGGuccGCugCc -3'
miRNA:   3'- agUCG--UUCCGGUa---GGGGGCCU---CGugG- -5'
29021 3' -59.5 NC_006146.1 + 45721 0.67 0.743725
Target:  5'- gCAGCGGGGCCAcgaCCCUGaccuGGC-CCa -3'
miRNA:   3'- aGUCGUUCCGGUag-GGGGCc---UCGuGG- -5'
29021 3' -59.5 NC_006146.1 + 135742 0.67 0.743725
Target:  5'- -gGGCcgGGGGCCGggugCCCCUGGGuccGCugCc -3'
miRNA:   3'- agUCG--UUCCGGUa---GGGGGCCU---CGugG- -5'
29021 3' -59.5 NC_006146.1 + 127938 0.67 0.743725
Target:  5'- aCAGgAggagagaggauGGGCCucgucgcgggaGUCCUCCGGAGCuuggcGCCg -3'
miRNA:   3'- aGUCgU-----------UCCGG-----------UAGGGGGCCUCG-----UGG- -5'
29021 3' -59.5 NC_006146.1 + 137229 0.67 0.743725
Target:  5'- -gGGCcgGGGGCCGggugCCCCUGGGuccGCugCc -3'
miRNA:   3'- agUCG--UUCCGGUa---GGGGGCCU---CGugG- -5'
29021 3' -59.5 NC_006146.1 + 137322 0.67 0.743725
Target:  5'- -gGGCcgGGGGCCGggugCCCCUGGGuccGCugCc -3'
miRNA:   3'- agUCG--UUCCGGUa---GGGGGCCU---CGugG- -5'
29021 3' -59.5 NC_006146.1 + 136114 0.67 0.743725
Target:  5'- -gGGCcgGGGGCCGggugCCCCUGGGuccGCugCc -3'
miRNA:   3'- agUCG--UUCCGGUa---GGGGGCCU---CGugG- -5'
29021 3' -59.5 NC_006146.1 + 136021 0.67 0.743725
Target:  5'- -gGGCcgGGGGCCGggugCCCCUGGGuccGCugCc -3'
miRNA:   3'- agUCG--UUCCGGUa---GGGGGCCU---CGugG- -5'
29021 3' -59.5 NC_006146.1 + 136486 0.67 0.743725
Target:  5'- -gGGCcgGGGGCCGggugCCCCUGGGuccGCugCc -3'
miRNA:   3'- agUCG--UUCCGGUa---GGGGGCCU---CGugG- -5'
29021 3' -59.5 NC_006146.1 + 48137 0.67 0.743725
Target:  5'- -gAGUucGGCCAgCCCCCGcucGUACCc -3'
miRNA:   3'- agUCGuuCCGGUaGGGGGCcu-CGUGG- -5'
29021 3' -59.5 NC_006146.1 + 153942 0.67 0.743725
Target:  5'- cCAGgAAGGCCcgCcgcuCCCCGuuGGGCACg -3'
miRNA:   3'- aGUCgUUCCGGuaG----GGGGC--CUCGUGg -5'
29021 3' -59.5 NC_006146.1 + 135464 0.67 0.743725
Target:  5'- -gGGCcgGGGGCCGggugCCCCUGGGuccGCugCc -3'
miRNA:   3'- agUCG--UUCCGGUa---GGGGGCCU---CGugG- -5'
29021 3' -59.5 NC_006146.1 + 30203 0.67 0.743725
Target:  5'- aCAGCcagAGGGCCGcugcgCCCgCCGG-GCugGCCg -3'
miRNA:   3'- aGUCG---UUCCGGUa----GGG-GGCCuCG--UGG- -5'
29021 3' -59.5 NC_006146.1 + 136393 0.67 0.743725
Target:  5'- -gGGCcgGGGGCCGggugCCCCUGGGuccGCugCc -3'
miRNA:   3'- agUCG--UUCCGGUa---GGGGGCCU---CGugG- -5'
29021 3' -59.5 NC_006146.1 + 721 0.67 0.743725
Target:  5'- cCGGCcccgcccucGGGaGCCcccucagCCCCCGGccGGCGCCg -3'
miRNA:   3'- aGUCG---------UUC-CGGua-----GGGGGCC--UCGUGG- -5'
29021 3' -59.5 NC_006146.1 + 1652 0.67 0.743725
Target:  5'- cCGGCcccgcccucGGGaGCCcccucagCCCCCGGccGGCGCCg -3'
miRNA:   3'- aGUCG---------UUC-CGGua-----GGGGGCC--UCGUGG- -5'
29021 3' -59.5 NC_006146.1 + 2584 0.67 0.743725
Target:  5'- cCGGCcccgcccucGGGaGCCcccucagCCCCCGGccGGCGCCg -3'
miRNA:   3'- aGUCG---------UUC-CGGua-----GGGGGCC--UCGUGG- -5'
29021 3' -59.5 NC_006146.1 + 3516 0.67 0.743725
Target:  5'- cCGGCcccgcccucGGGaGCCcccucagCCCCCGGccGGCGCCg -3'
miRNA:   3'- aGUCG---------UUC-CGGua-----GGGGGCC--UCGUGG- -5'
29021 3' -59.5 NC_006146.1 + 71156 0.67 0.743725
Target:  5'- -uGGCcucuuccgauGGGuCCGcgUCCUCGGAGCACCg -3'
miRNA:   3'- agUCGu---------UCC-GGUa-GGGGGCCUCGUGG- -5'
29021 3' -59.5 NC_006146.1 + 99646 0.67 0.743725
Target:  5'- -aGGCGuagAGGCCGcCCCCCgccaggccccaGGAGUugACCa -3'
miRNA:   3'- agUCGU---UCCGGUaGGGGG-----------CCUCG--UGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.