miRNA display CGI


Results 21 - 40 of 64 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29021 5' -59.7 NC_006146.1 + 57294 1.08 0.001775
Target:  5'- gACGGUCCCCCAGGAGGCCUUUGUGGAc -3'
miRNA:   3'- -UGCCAGGGGGUCCUCCGGAAACACCU- -5'
29021 5' -59.7 NC_006146.1 + 58903 0.67 0.726436
Target:  5'- cUGGUCUCCCucucuGGAcccuGGUgUUUGUGGGc -3'
miRNA:   3'- uGCCAGGGGGu----CCU----CCGgAAACACCU- -5'
29021 5' -59.7 NC_006146.1 + 64107 0.68 0.648044
Target:  5'- -gGGUCCUCgAGGAuGGCacggGUGGAg -3'
miRNA:   3'- ugCCAGGGGgUCCU-CCGgaaaCACCU- -5'
29021 5' -59.7 NC_006146.1 + 76097 0.7 0.549324
Target:  5'- gUGGgcaaCCCCCGGGccucGGCCUacGUGGAc -3'
miRNA:   3'- uGCCa---GGGGGUCCu---CCGGAaaCACCU- -5'
29021 5' -59.7 NC_006146.1 + 113639 0.69 0.609299
Target:  5'- gACGGUgCUCCGGGGgauGGCCUUgcugaccacgggcccGUGGAc -3'
miRNA:   3'- -UGCCAgGGGGUCCU---CCGGAAa--------------CACCU- -5'
29021 5' -59.7 NC_006146.1 + 117787 0.67 0.726436
Target:  5'- cGCGcUCCCCCGGGccGGGCCgccuccGGAc -3'
miRNA:   3'- -UGCcAGGGGGUCC--UCCGGaaaca-CCU- -5'
29021 5' -59.7 NC_006146.1 + 117977 0.65 0.798167
Target:  5'- gGCGGacgaggccagcgCCCCCGGGGGGCCa------- -3'
miRNA:   3'- -UGCCa-----------GGGGGUCCUCCGGaaacaccu -5'
29021 5' -59.7 NC_006146.1 + 123515 0.7 0.520472
Target:  5'- cACGGUCgaCCCCAGGcGGGUCgcggGUGGc -3'
miRNA:   3'- -UGCCAG--GGGGUCC-UCCGGaaa-CACCu -5'
29021 5' -59.7 NC_006146.1 + 137021 0.7 0.559055
Target:  5'- cCGGgcacaCCCCggggAGGAGGCCgg-GUGGGg -3'
miRNA:   3'- uGCCag---GGGG----UCCUCCGGaaaCACCU- -5'
29021 5' -59.7 NC_006146.1 + 137970 0.67 0.716818
Target:  5'- cGCGGccgggCCUCCcGGGGGCCcggcgggGUGGGg -3'
miRNA:   3'- -UGCCa----GGGGGuCCUCCGGaaa----CACCU- -5'
29021 5' -59.7 NC_006146.1 + 139146 0.68 0.687588
Target:  5'- aACGGgggcucccgUCCCCCGGGGGGgCgccUGUGaGGc -3'
miRNA:   3'- -UGCC---------AGGGGGUCCUCCgGaa-ACAC-CU- -5'
29021 5' -59.7 NC_006146.1 + 139451 0.66 0.764056
Target:  5'- cACGGUgCCCgGGGGGguGCCUgcacUGGAg -3'
miRNA:   3'- -UGCCAgGGGgUCCUC--CGGAaac-ACCU- -5'
29021 5' -59.7 NC_006146.1 + 141411 0.66 0.782237
Target:  5'- --aGUCCCCCcuGGAcgGGCCUgggGUGGc -3'
miRNA:   3'- ugcCAGGGGGu-CCU--CCGGAaa-CACCu -5'
29021 5' -59.7 NC_006146.1 + 141677 0.66 0.754796
Target:  5'- -gGGUCCCuCCGGccGGCCUgauggacccgGUGGGg -3'
miRNA:   3'- ugCCAGGG-GGUCcuCCGGAaa--------CACCU- -5'
29021 5' -59.7 NC_006146.1 + 141790 0.69 0.58851
Target:  5'- -gGGUCCCuCCGGccGGCCUg-GUGGAc -3'
miRNA:   3'- ugCCAGGG-GGUCcuCCGGAaaCACCU- -5'
29021 5' -59.7 NC_006146.1 + 144489 0.66 0.782237
Target:  5'- --aGUCCCCCcuGGAcgGGCCUgggGUGGc -3'
miRNA:   3'- ugcCAGGGGGu-CCU--CCGGAaa-CACCu -5'
29021 5' -59.7 NC_006146.1 + 144754 0.66 0.754796
Target:  5'- -gGGUCCCuCCGGccGGCCUgauggacccgGUGGGg -3'
miRNA:   3'- ugCCAGGG-GGUCcuCCGGAaa--------CACCU- -5'
29021 5' -59.7 NC_006146.1 + 144868 0.69 0.58851
Target:  5'- -gGGUCCCuCCGGccGGCCUg-GUGGAc -3'
miRNA:   3'- ugCCAGGG-GGUCcuCCGGAaaCACCU- -5'
29021 5' -59.7 NC_006146.1 + 147567 0.66 0.782237
Target:  5'- --aGUCCCCCcuGGAcgGGCCUgggGUGGc -3'
miRNA:   3'- ugcCAGGGGGu-CCU--CCGGAaa-CACCu -5'
29021 5' -59.7 NC_006146.1 + 147832 0.66 0.754796
Target:  5'- -gGGUCCCuCCGGccGGCCUgauggacccgGUGGGg -3'
miRNA:   3'- ugCCAGGG-GGUCcuCCGGAaa--------CACCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.