Results 21 - 40 of 49 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29022 | 5' | -51.2 | NC_006146.1 | + | 67904 | 0.67 | 0.979654 |
Target: 5'- cGAACUGG--GCCucg--UGGGAGCCg -3' miRNA: 3'- aCUUGACCagUGGucgaaACUCUCGG- -5' |
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29022 | 5' | -51.2 | NC_006146.1 | + | 69378 | 0.66 | 0.989827 |
Target: 5'- cGAGCUGGcagaagCGCCGGUacuugUUGAGGaacacggucugcucGCCa -3' miRNA: 3'- aCUUGACCa-----GUGGUCGa----AACUCU--------------CGG- -5' |
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29022 | 5' | -51.2 | NC_006146.1 | + | 70170 | 0.68 | 0.971933 |
Target: 5'- gGcGCUGGUgGCCGGC---GAG-GCCg -3' miRNA: 3'- aCuUGACCAgUGGUCGaaaCUCuCGG- -5' |
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29022 | 5' | -51.2 | NC_006146.1 | + | 71816 | 0.74 | 0.749513 |
Target: 5'- gGGACUGGUUGCCA-CUgaUGuAGAGCCg -3' miRNA: 3'- aCUUGACCAGUGGUcGAa-AC-UCUCGG- -5' |
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29022 | 5' | -51.2 | NC_006146.1 | + | 72522 | 0.7 | 0.936641 |
Target: 5'- gGAGCggacGG-CugCGGCUcucgGGGAGCCa -3' miRNA: 3'- aCUUGa---CCaGugGUCGAaa--CUCUCGG- -5' |
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29022 | 5' | -51.2 | NC_006146.1 | + | 85546 | 0.7 | 0.926087 |
Target: 5'- cGAACUGGcCACCAcCUUaGAGA-CCa -3' miRNA: 3'- aCUUGACCaGUGGUcGAAaCUCUcGG- -5' |
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29022 | 5' | -51.2 | NC_006146.1 | + | 85825 | 0.66 | 0.988853 |
Target: 5'- gGAGCUGGU-GCCuuGGCUUUaaaaGAgGAGCUg -3' miRNA: 3'- aCUUGACCAgUGG--UCGAAA----CU-CUCGG- -5' |
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29022 | 5' | -51.2 | NC_006146.1 | + | 93437 | 0.68 | 0.968944 |
Target: 5'- cUGGGCcuuggcuaUGGUCaugGCCAGCUU--GGAGCUg -3' miRNA: 3'- -ACUUG--------ACCAG---UGGUCGAAacUCUCGG- -5' |
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29022 | 5' | -51.2 | NC_006146.1 | + | 96074 | 0.71 | 0.888346 |
Target: 5'- gGAGCUGcaCACCAGgaUUaAGAGCCu -3' miRNA: 3'- aCUUGACcaGUGGUCgaAAcUCUCGG- -5' |
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29022 | 5' | -51.2 | NC_006146.1 | + | 107922 | 0.67 | 0.987339 |
Target: 5'- aUGGGa-GGUCGUCAGCUccUGGGAGCUc -3' miRNA: 3'- -ACUUgaCCAGUGGUCGAa-ACUCUCGG- -5' |
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29022 | 5' | -51.2 | NC_006146.1 | + | 114813 | 0.69 | 0.950576 |
Target: 5'- gGAGCUGGUgGCCgacaccuacuuGGCccggUGGGAcGCCu -3' miRNA: 3'- aCUUGACCAgUGG-----------UCGaa--ACUCU-CGG- -5' |
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29022 | 5' | -51.2 | NC_006146.1 | + | 117014 | 0.68 | 0.977281 |
Target: 5'- cUGGAcCUGGgcuaCGCCcuaacgggGGCgcUGAGGGCCa -3' miRNA: 3'- -ACUU-GACCa---GUGG--------UCGaaACUCUCGG- -5' |
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29022 | 5' | -51.2 | NC_006146.1 | + | 118785 | 0.73 | 0.80604 |
Target: 5'- cGAGCUGGUguCCAGCgacgGGGAacagaugGCCu -3' miRNA: 3'- aCUUGACCAguGGUCGaaa-CUCU-------CGG- -5' |
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29022 | 5' | -51.2 | NC_006146.1 | + | 125598 | 0.66 | 0.991457 |
Target: 5'- gGAGCUGuUCuCCGGCUUUccaccGAGGGUg -3' miRNA: 3'- aCUUGACcAGuGGUCGAAA-----CUCUCGg -5' |
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29022 | 5' | -51.2 | NC_006146.1 | + | 125791 | 0.66 | 0.991457 |
Target: 5'- -cGGC-GGUCACCGGCc----GAGCCg -3' miRNA: 3'- acUUGaCCAGUGGUCGaaacuCUCGG- -5' |
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29022 | 5' | -51.2 | NC_006146.1 | + | 126857 | 0.66 | 0.994436 |
Target: 5'- aGGACgcuccaGGUCGaguucCCGGCUUU--GAGCCa -3' miRNA: 3'- aCUUGa-----CCAGU-----GGUCGAAAcuCUCGG- -5' |
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29022 | 5' | -51.2 | NC_006146.1 | + | 128326 | 0.7 | 0.941537 |
Target: 5'- cGGGCUGGUCcuGCUGGCccugGAGAugaaGCCg -3' miRNA: 3'- aCUUGACCAG--UGGUCGaaa-CUCU----CGG- -5' |
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29022 | 5' | -51.2 | NC_006146.1 | + | 129049 | 0.69 | 0.95863 |
Target: 5'- cGAGCUGGgcccagaCGCCGGCgcaGAcAGCCc -3' miRNA: 3'- aCUUGACCa------GUGGUCGaaaCUcUCGG- -5' |
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29022 | 5' | -51.2 | NC_006146.1 | + | 129465 | 0.67 | 0.987339 |
Target: 5'- ----aUGGUgcaaGCUAGCgagGAGAGCCg -3' miRNA: 3'- acuugACCAg---UGGUCGaaaCUCUCGG- -5' |
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29022 | 5' | -51.2 | NC_006146.1 | + | 133086 | 0.66 | 0.990223 |
Target: 5'- gGGGgUGGUC-CC-GCUccGAGAGCUu -3' miRNA: 3'- aCUUgACCAGuGGuCGAaaCUCUCGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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