miRNA display CGI


Results 1 - 20 of 49 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29022 5' -51.2 NC_006146.1 + 4332 0.67 0.987339
Target:  5'- aGGGCgGGUCGCU--CUUUGAGcAGCUc -3'
miRNA:   3'- aCUUGaCCAGUGGucGAAACUC-UCGG- -5'
29022 5' -51.2 NC_006146.1 + 4480 0.67 0.979654
Target:  5'- gGGGCUGGUUACguGuCUUgugGAGAuggcacuggcggGCCa -3'
miRNA:   3'- aCUUGACCAGUGguC-GAAa--CUCU------------CGG- -5'
29022 5' -51.2 NC_006146.1 + 10231 0.66 0.994436
Target:  5'- ---cCUGGUCauguGCCGGCUccUGAaGGCCu -3'
miRNA:   3'- acuuGACCAG----UGGUCGAa-ACUcUCGG- -5'
29022 5' -51.2 NC_006146.1 + 10334 0.7 0.926087
Target:  5'- aUGcAGCUcaUCAUCAGCgugcUGAGAGCCg -3'
miRNA:   3'- -AC-UUGAccAGUGGUCGaa--ACUCUCGG- -5'
29022 5' -51.2 NC_006146.1 + 10814 0.69 0.954724
Target:  5'- --cGCUGGgCACCGGCUacacGGGCCa -3'
miRNA:   3'- acuUGACCaGUGGUCGAaacuCUCGG- -5'
29022 5' -51.2 NC_006146.1 + 14312 0.69 0.962299
Target:  5'- gGAGCUGGcgCACCuGCUggaGAacucacgcaGGGCCg -3'
miRNA:   3'- aCUUGACCa-GUGGuCGAaa-CU---------CUCGG- -5'
29022 5' -51.2 NC_006146.1 + 17786 0.66 0.991457
Target:  5'- aGAGCaugagGGUCcCgGGCUccGAGAGCa -3'
miRNA:   3'- aCUUGa----CCAGuGgUCGAaaCUCUCGg -5'
29022 5' -51.2 NC_006146.1 + 39065 0.68 0.97471
Target:  5'- gUGAA-UGGUCGCCGGCcuccggucUGGGgaaGGCCa -3'
miRNA:   3'- -ACUUgACCAGUGGUCGaa------ACUC---UCGG- -5'
29022 5' -51.2 NC_006146.1 + 40068 0.69 0.962299
Target:  5'- aGGACaGcGUCucCCGGCg--GAGGGCCu -3'
miRNA:   3'- aCUUGaC-CAGu-GGUCGaaaCUCUCGG- -5'
29022 5' -51.2 NC_006146.1 + 46783 0.66 0.990223
Target:  5'- gGAugGCUGGcCgGCCGGCgc-GAGGGCa -3'
miRNA:   3'- aCU--UGACCaG-UGGUCGaaaCUCUCGg -5'
29022 5' -51.2 NC_006146.1 + 46934 0.67 0.979654
Target:  5'- gGGACUcGGUCuCCAGCcacaGGGuGCCc -3'
miRNA:   3'- aCUUGA-CCAGuGGUCGaaa-CUCuCGG- -5'
29022 5' -51.2 NC_006146.1 + 47054 0.72 0.866183
Target:  5'- gGGGCcGGUCGCCGGUgucggUGAGGgggcGCCu -3'
miRNA:   3'- aCUUGaCCAGUGGUCGaa---ACUCU----CGG- -5'
29022 5' -51.2 NC_006146.1 + 51371 0.72 0.858338
Target:  5'- gGGAUcuUGGUCACCcGCUUcaGAuGAGCCa -3'
miRNA:   3'- aCUUG--ACCAGUGGuCGAAa-CU-CUCGG- -5'
29022 5' -51.2 NC_006146.1 + 52125 0.68 0.97471
Target:  5'- --cGCUGGaCACCAGCUc---GGGCCc -3'
miRNA:   3'- acuUGACCaGUGGUCGAaacuCUCGG- -5'
29022 5' -51.2 NC_006146.1 + 52806 0.7 0.919847
Target:  5'- gGGACUGGUUGcacgaggccgugcCCAGgaUgcgGAGGGCCg -3'
miRNA:   3'- aCUUGACCAGU-------------GGUCgaAa--CUCUCGG- -5'
29022 5' -51.2 NC_006146.1 + 52891 0.77 0.635488
Target:  5'- aGAACUGGUCA-CGGCcgUGAGcuacGGCCg -3'
miRNA:   3'- aCUUGACCAGUgGUCGaaACUC----UCGG- -5'
29022 5' -51.2 NC_006146.1 + 53770 0.66 0.990223
Target:  5'- cGGGCggaGGUCucGCCGGac--GAGGGCCu -3'
miRNA:   3'- aCUUGa--CCAG--UGGUCgaaaCUCUCGG- -5'
29022 5' -51.2 NC_006146.1 + 60478 1.14 0.004165
Target:  5'- aUGAACUGGUCACCAGCUUUGAGAGCCa -3'
miRNA:   3'- -ACUUGACCAGUGGUCGAAACUCUCGG- -5'
29022 5' -51.2 NC_006146.1 + 62108 0.67 0.985671
Target:  5'- aGGACUGcUCGCCucGGCgg-GAGAccuGCCa -3'
miRNA:   3'- aCUUGACcAGUGG--UCGaaaCUCU---CGG- -5'
29022 5' -51.2 NC_006146.1 + 65537 0.66 0.992564
Target:  5'- aGAcCUGGUgGcCCAGCaacucAGAGCCu -3'
miRNA:   3'- aCUuGACCAgU-GGUCGaaac-UCUCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.