Results 1 - 20 of 49 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29022 | 5' | -51.2 | NC_006146.1 | + | 60478 | 1.14 | 0.004165 |
Target: 5'- aUGAACUGGUCACCAGCUUUGAGAGCCa -3' miRNA: 3'- -ACUUGACCAGUGGUCGAAACUCUCGG- -5' |
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29022 | 5' | -51.2 | NC_006146.1 | + | 52891 | 0.77 | 0.635488 |
Target: 5'- aGAACUGGUCA-CGGCcgUGAGcuacGGCCg -3' miRNA: 3'- aCUUGACCAGUgGUCGaaACUC----UCGG- -5' |
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29022 | 5' | -51.2 | NC_006146.1 | + | 71816 | 0.74 | 0.749513 |
Target: 5'- gGGACUGGUUGCCA-CUgaUGuAGAGCCg -3' miRNA: 3'- aCUUGACCAGUGGUcGAa-AC-UCUCGG- -5' |
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29022 | 5' | -51.2 | NC_006146.1 | + | 154593 | 0.74 | 0.778864 |
Target: 5'- gGAAgaGGUCGCCguGGCUg-GAGAGCUc -3' miRNA: 3'- aCUUgaCCAGUGG--UCGAaaCUCUCGG- -5' |
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29022 | 5' | -51.2 | NC_006146.1 | + | 118785 | 0.73 | 0.80604 |
Target: 5'- cGAGCUGGUguCCAGCgacgGGGAacagaugGCCu -3' miRNA: 3'- aCUUGACCAguGGUCGaaa-CUCU-------CGG- -5' |
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29022 | 5' | -51.2 | NC_006146.1 | + | 51371 | 0.72 | 0.858338 |
Target: 5'- gGGAUcuUGGUCACCcGCUUcaGAuGAGCCa -3' miRNA: 3'- aCUUG--ACCAGUGGuCGAAa-CU-CUCGG- -5' |
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29022 | 5' | -51.2 | NC_006146.1 | + | 47054 | 0.72 | 0.866183 |
Target: 5'- gGGGCcGGUCGCCGGUgucggUGAGGgggcGCCu -3' miRNA: 3'- aCUUGaCCAGUGGUCGaa---ACUCU----CGG- -5' |
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29022 | 5' | -51.2 | NC_006146.1 | + | 96074 | 0.71 | 0.888346 |
Target: 5'- gGAGCUGcaCACCAGgaUUaAGAGCCu -3' miRNA: 3'- aCUUGACcaGUGGUCgaAAcUCUCGG- -5' |
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29022 | 5' | -51.2 | NC_006146.1 | + | 161635 | 0.71 | 0.895259 |
Target: 5'- cUGAGCUGGUgGCCuuAGUUUgcUGuGGGCUg -3' miRNA: 3'- -ACUUGACCAgUGG--UCGAA--ACuCUCGG- -5' |
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29022 | 5' | -51.2 | NC_006146.1 | + | 52806 | 0.7 | 0.919847 |
Target: 5'- gGGACUGGUUGcacgaggccgugcCCAGgaUgcgGAGGGCCg -3' miRNA: 3'- aCUUGACCAGU-------------GGUCgaAa--CUCUCGG- -5' |
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29022 | 5' | -51.2 | NC_006146.1 | + | 157678 | 0.7 | 0.922721 |
Target: 5'- aGAACUGGUCugGCCgcaggccuucaggauGGCgUUGuuGAGCCg -3' miRNA: 3'- aCUUGACCAG--UGG---------------UCGaAACu-CUCGG- -5' |
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29022 | 5' | -51.2 | NC_006146.1 | + | 10334 | 0.7 | 0.926087 |
Target: 5'- aUGcAGCUcaUCAUCAGCgugcUGAGAGCCg -3' miRNA: 3'- -AC-UUGAccAGUGGUCGaa--ACUCUCGG- -5' |
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29022 | 5' | -51.2 | NC_006146.1 | + | 85546 | 0.7 | 0.926087 |
Target: 5'- cGAACUGGcCACCAcCUUaGAGA-CCa -3' miRNA: 3'- aCUUGACCaGUGGUcGAAaCUCUcGG- -5' |
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29022 | 5' | -51.2 | NC_006146.1 | + | 72522 | 0.7 | 0.936641 |
Target: 5'- gGAGCggacGG-CugCGGCUcucgGGGAGCCa -3' miRNA: 3'- aCUUGa---CCaGugGUCGAaa--CUCUCGG- -5' |
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29022 | 5' | -51.2 | NC_006146.1 | + | 128326 | 0.7 | 0.941537 |
Target: 5'- cGGGCUGGUCcuGCUGGCccugGAGAugaaGCCg -3' miRNA: 3'- aCUUGACCAG--UGGUCGaaa-CUCU----CGG- -5' |
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29022 | 5' | -51.2 | NC_006146.1 | + | 114813 | 0.69 | 0.950576 |
Target: 5'- gGAGCUGGUgGCCgacaccuacuuGGCccggUGGGAcGCCu -3' miRNA: 3'- aCUUGACCAgUGG-----------UCGaa--ACUCU-CGG- -5' |
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29022 | 5' | -51.2 | NC_006146.1 | + | 10814 | 0.69 | 0.954724 |
Target: 5'- --cGCUGGgCACCGGCUacacGGGCCa -3' miRNA: 3'- acuUGACCaGUGGUCGAaacuCUCGG- -5' |
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29022 | 5' | -51.2 | NC_006146.1 | + | 129049 | 0.69 | 0.95863 |
Target: 5'- cGAGCUGGgcccagaCGCCGGCgcaGAcAGCCc -3' miRNA: 3'- aCUUGACCa------GUGGUCGaaaCUcUCGG- -5' |
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29022 | 5' | -51.2 | NC_006146.1 | + | 14312 | 0.69 | 0.962299 |
Target: 5'- gGAGCUGGcgCACCuGCUggaGAacucacgcaGGGCCg -3' miRNA: 3'- aCUUGACCa-GUGGuCGAaa-CU---------CUCGG- -5' |
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29022 | 5' | -51.2 | NC_006146.1 | + | 40068 | 0.69 | 0.962299 |
Target: 5'- aGGACaGcGUCucCCGGCg--GAGGGCCu -3' miRNA: 3'- aCUUGaC-CAGu-GGUCGaaaCUCUCGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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