Results 1 - 20 of 49 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29022 | 5' | -51.2 | NC_006146.1 | + | 96074 | 0.71 | 0.888346 |
Target: 5'- gGAGCUGcaCACCAGgaUUaAGAGCCu -3' miRNA: 3'- aCUUGACcaGUGGUCgaAAcUCUCGG- -5' |
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29022 | 5' | -51.2 | NC_006146.1 | + | 4480 | 0.67 | 0.979654 |
Target: 5'- gGGGCUGGUUACguGuCUUgugGAGAuggcacuggcggGCCa -3' miRNA: 3'- aCUUGACCAGUGguC-GAAa--CUCU------------CGG- -5' |
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29022 | 5' | -51.2 | NC_006146.1 | + | 67904 | 0.67 | 0.979654 |
Target: 5'- cGAACUGG--GCCucg--UGGGAGCCg -3' miRNA: 3'- aCUUGACCagUGGucgaaACUCUCGG- -5' |
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29022 | 5' | -51.2 | NC_006146.1 | + | 126857 | 0.66 | 0.994436 |
Target: 5'- aGGACgcuccaGGUCGaguucCCGGCUUU--GAGCCa -3' miRNA: 3'- aCUUGa-----CCAGU-----GGUCGAAAcuCUCGG- -5' |
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29022 | 5' | -51.2 | NC_006146.1 | + | 128326 | 0.7 | 0.941537 |
Target: 5'- cGGGCUGGUCcuGCUGGCccugGAGAugaaGCCg -3' miRNA: 3'- aCUUGACCAG--UGGUCGaaa-CUCU----CGG- -5' |
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29022 | 5' | -51.2 | NC_006146.1 | + | 129049 | 0.69 | 0.95863 |
Target: 5'- cGAGCUGGgcccagaCGCCGGCgcaGAcAGCCc -3' miRNA: 3'- aCUUGACCa------GUGGUCGaaaCUcUCGG- -5' |
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29022 | 5' | -51.2 | NC_006146.1 | + | 60478 | 1.14 | 0.004165 |
Target: 5'- aUGAACUGGUCACCAGCUUUGAGAGCCa -3' miRNA: 3'- -ACUUGACCAGUGGUCGAAACUCUCGG- -5' |
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29022 | 5' | -51.2 | NC_006146.1 | + | 71816 | 0.74 | 0.749513 |
Target: 5'- gGGACUGGUUGCCA-CUgaUGuAGAGCCg -3' miRNA: 3'- aCUUGACCAGUGGUcGAa-AC-UCUCGG- -5' |
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29022 | 5' | -51.2 | NC_006146.1 | + | 154593 | 0.74 | 0.778864 |
Target: 5'- gGAAgaGGUCGCCguGGCUg-GAGAGCUc -3' miRNA: 3'- aCUUgaCCAGUGG--UCGAaaCUCUCGG- -5' |
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29022 | 5' | -51.2 | NC_006146.1 | + | 52125 | 0.68 | 0.97471 |
Target: 5'- --cGCUGGaCACCAGCUc---GGGCCc -3' miRNA: 3'- acuUGACCaGUGGUCGAaacuCUCGG- -5' |
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29022 | 5' | -51.2 | NC_006146.1 | + | 70170 | 0.68 | 0.971933 |
Target: 5'- gGcGCUGGUgGCCGGC---GAG-GCCg -3' miRNA: 3'- aCuUGACCAgUGGUCGaaaCUCuCGG- -5' |
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29022 | 5' | -51.2 | NC_006146.1 | + | 153423 | 0.68 | 0.968944 |
Target: 5'- gGGGCgGGUgugGCUGGCUUUGgaGGGGCCg -3' miRNA: 3'- aCUUGaCCAg--UGGUCGAAAC--UCUCGG- -5' |
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29022 | 5' | -51.2 | NC_006146.1 | + | 161635 | 0.71 | 0.895259 |
Target: 5'- cUGAGCUGGUgGCCuuAGUUUgcUGuGGGCUg -3' miRNA: 3'- -ACUUGACCAgUGG--UCGAA--ACuCUCGG- -5' |
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29022 | 5' | -51.2 | NC_006146.1 | + | 139444 | 0.68 | 0.97471 |
Target: 5'- aGGACUGG-UACCugagAGCU--GAGAGUCu -3' miRNA: 3'- aCUUGACCaGUGG----UCGAaaCUCUCGG- -5' |
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29022 | 5' | -51.2 | NC_006146.1 | + | 52806 | 0.7 | 0.919847 |
Target: 5'- gGGACUGGUUGcacgaggccgugcCCAGgaUgcgGAGGGCCg -3' miRNA: 3'- aCUUGACCAGU-------------GGUCgaAa--CUCUCGG- -5' |
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29022 | 5' | -51.2 | NC_006146.1 | + | 93437 | 0.68 | 0.968944 |
Target: 5'- cUGGGCcuuggcuaUGGUCaugGCCAGCUU--GGAGCUg -3' miRNA: 3'- -ACUUG--------ACCAG---UGGUCGAAacUCUCGG- -5' |
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29022 | 5' | -51.2 | NC_006146.1 | + | 39065 | 0.68 | 0.97471 |
Target: 5'- gUGAA-UGGUCGCCGGCcuccggucUGGGgaaGGCCa -3' miRNA: 3'- -ACUUgACCAGUGGUCGaa------ACUC---UCGG- -5' |
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29022 | 5' | -51.2 | NC_006146.1 | + | 46934 | 0.67 | 0.979654 |
Target: 5'- gGGACUcGGUCuCCAGCcacaGGGuGCCc -3' miRNA: 3'- aCUUGA-CCAGuGGUCGaaa-CUCuCGG- -5' |
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29022 | 5' | -51.2 | NC_006146.1 | + | 157678 | 0.7 | 0.922721 |
Target: 5'- aGAACUGGUCugGCCgcaggccuucaggauGGCgUUGuuGAGCCg -3' miRNA: 3'- aCUUGACCAG--UGG---------------UCGaAACu-CUCGG- -5' |
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29022 | 5' | -51.2 | NC_006146.1 | + | 145199 | 0.68 | 0.968633 |
Target: 5'- gGGGCUGG-C-CCGGCUUccacuccUGAGGGUa -3' miRNA: 3'- aCUUGACCaGuGGUCGAA-------ACUCUCGg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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