miRNA display CGI


Results 21 - 40 of 49 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29022 5' -51.2 NC_006146.1 + 154593 0.74 0.778864
Target:  5'- gGAAgaGGUCGCCguGGCUg-GAGAGCUc -3'
miRNA:   3'- aCUUgaCCAGUGG--UCGAaaCUCUCGG- -5'
29022 5' -51.2 NC_006146.1 + 169168 0.67 0.987339
Target:  5'- gGGGCcGG-CGCCuGCaggGGGGGCCg -3'
miRNA:   3'- aCUUGaCCaGUGGuCGaaaCUCUCGG- -5'
29022 5' -51.2 NC_006146.1 + 107922 0.67 0.987339
Target:  5'- aUGGGa-GGUCGUCAGCUccUGGGAGCUc -3'
miRNA:   3'- -ACUUgaCCAGUGGUCGAa-ACUCUCGG- -5'
29022 5' -51.2 NC_006146.1 + 126857 0.66 0.994436
Target:  5'- aGGACgcuccaGGUCGaguucCCGGCUUU--GAGCCa -3'
miRNA:   3'- aCUUGa-----CCAGU-----GGUCGAAAcuCUCGG- -5'
29022 5' -51.2 NC_006146.1 + 46934 0.67 0.979654
Target:  5'- gGGACUcGGUCuCCAGCcacaGGGuGCCc -3'
miRNA:   3'- aCUUGA-CCAGuGGUCGaaa-CUCuCGG- -5'
29022 5' -51.2 NC_006146.1 + 69378 0.66 0.989827
Target:  5'- cGAGCUGGcagaagCGCCGGUacuugUUGAGGaacacggucugcucGCCa -3'
miRNA:   3'- aCUUGACCa-----GUGGUCGa----AACUCU--------------CGG- -5'
29022 5' -51.2 NC_006146.1 + 133086 0.66 0.990223
Target:  5'- gGGGgUGGUC-CC-GCUccGAGAGCUu -3'
miRNA:   3'- aCUUgACCAGuGGuCGAaaCUCUCGG- -5'
29022 5' -51.2 NC_006146.1 + 168236 0.67 0.987339
Target:  5'- gGGGCcGG-CGCCuGCaggGGGGGCCg -3'
miRNA:   3'- aCUUGaCCaGUGGuCGaaaCUCUCGG- -5'
29022 5' -51.2 NC_006146.1 + 46783 0.66 0.990223
Target:  5'- gGAugGCUGGcCgGCCGGCgc-GAGGGCa -3'
miRNA:   3'- aCU--UGACCaG-UGGUCGaaaCUCUCGg -5'
29022 5' -51.2 NC_006146.1 + 71816 0.74 0.749513
Target:  5'- gGGACUGGUUGCCA-CUgaUGuAGAGCCg -3'
miRNA:   3'- aCUUGACCAGUGGUcGAa-AC-UCUCGG- -5'
29022 5' -51.2 NC_006146.1 + 60478 1.14 0.004165
Target:  5'- aUGAACUGGUCACCAGCUUUGAGAGCCa -3'
miRNA:   3'- -ACUUGACCAGUGGUCGAAACUCUCGG- -5'
29022 5' -51.2 NC_006146.1 + 53770 0.66 0.990223
Target:  5'- cGGGCggaGGUCucGCCGGac--GAGGGCCu -3'
miRNA:   3'- aCUUGa--CCAG--UGGUCgaaaCUCUCGG- -5'
29022 5' -51.2 NC_006146.1 + 125791 0.66 0.991457
Target:  5'- -cGGC-GGUCACCGGCc----GAGCCg -3'
miRNA:   3'- acUUGaCCAGUGGUCGaaacuCUCGG- -5'
29022 5' -51.2 NC_006146.1 + 85825 0.66 0.988853
Target:  5'- gGAGCUGGU-GCCuuGGCUUUaaaaGAgGAGCUg -3'
miRNA:   3'- aCUUGACCAgUGG--UCGAAA----CU-CUCGG- -5'
29022 5' -51.2 NC_006146.1 + 72522 0.7 0.936641
Target:  5'- gGAGCggacGG-CugCGGCUcucgGGGAGCCa -3'
miRNA:   3'- aCUUGa---CCaGugGUCGAaa--CUCUCGG- -5'
29022 5' -51.2 NC_006146.1 + 117014 0.68 0.977281
Target:  5'- cUGGAcCUGGgcuaCGCCcuaacgggGGCgcUGAGGGCCa -3'
miRNA:   3'- -ACUU-GACCa---GUGG--------UCGaaACUCUCGG- -5'
29022 5' -51.2 NC_006146.1 + 51371 0.72 0.858338
Target:  5'- gGGAUcuUGGUCACCcGCUUcaGAuGAGCCa -3'
miRNA:   3'- aCUUG--ACCAGUGGuCGAAa-CU-CUCGG- -5'
29022 5' -51.2 NC_006146.1 + 10334 0.7 0.926087
Target:  5'- aUGcAGCUcaUCAUCAGCgugcUGAGAGCCg -3'
miRNA:   3'- -AC-UUGAccAGUGGUCGaa--ACUCUCGG- -5'
29022 5' -51.2 NC_006146.1 + 85546 0.7 0.926087
Target:  5'- cGAACUGGcCACCAcCUUaGAGA-CCa -3'
miRNA:   3'- aCUUGACCaGUGGUcGAAaCUCUcGG- -5'
29022 5' -51.2 NC_006146.1 + 114813 0.69 0.950576
Target:  5'- gGAGCUGGUgGCCgacaccuacuuGGCccggUGGGAcGCCu -3'
miRNA:   3'- aCUUGACCAgUGG-----------UCGaa--ACUCU-CGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.