miRNA display CGI


Results 41 - 60 of 142 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29024 3' -57.6 NC_006146.1 + 44703 0.68 0.738569
Target:  5'- gGCggCGGuGGCCGuGGCCCccgcUGGCCGg -3'
miRNA:   3'- gCGaaGUU-CUGGUuCCGGG----ACCGGCa -5'
29024 3' -57.6 NC_006146.1 + 45405 0.71 0.578449
Target:  5'- aGCacgUCGguGGGCCAgcgcgAGGCCCcGGCCGg -3'
miRNA:   3'- gCGa--AGU--UCUGGU-----UCCGGGaCCGGCa -5'
29024 3' -57.6 NC_006146.1 + 46118 0.8 0.196064
Target:  5'- aGCagCAGGcauGCCcGGGCCCUGGCCGUg -3'
miRNA:   3'- gCGaaGUUC---UGGuUCCGGGACCGGCA- -5'
29024 3' -57.6 NC_006146.1 + 47198 0.71 0.568449
Target:  5'- cCGCccCGAGcGCCAGGcCCCUGGCCGc -3'
miRNA:   3'- -GCGaaGUUC-UGGUUCcGGGACCGGCa -5'
29024 3' -57.6 NC_006146.1 + 49067 0.66 0.860828
Target:  5'- gGCUggaUCGaaggaGGGCUGAGGCUCcGGCUGUg -3'
miRNA:   3'- gCGA---AGU-----UCUGGUUCCGGGaCCGGCA- -5'
29024 3' -57.6 NC_006146.1 + 49746 0.67 0.829073
Target:  5'- uCGUUUCAGGGgCGcgcGGCCCaGGCCc- -3'
miRNA:   3'- -GCGAAGUUCUgGUu--CCGGGaCCGGca -5'
29024 3' -57.6 NC_006146.1 + 50718 0.67 0.829073
Target:  5'- cCGggUCAuAGACgAGGGCCC-GGUCGg -3'
miRNA:   3'- -GCgaAGU-UCUGgUUCCGGGaCCGGCa -5'
29024 3' -57.6 NC_006146.1 + 52993 0.68 0.748173
Target:  5'- gCGUcUCGAGGCCccucuucuGGCCCUgGGCCu- -3'
miRNA:   3'- -GCGaAGUUCUGGuu------CCGGGA-CCGGca -5'
29024 3' -57.6 NC_006146.1 + 53483 0.68 0.757677
Target:  5'- uCGUcggUCAGGGCCGGgggugcggucuGGCUCUGGCUGc -3'
miRNA:   3'- -GCGa--AGUUCUGGUU-----------CCGGGACCGGCa -5'
29024 3' -57.6 NC_006146.1 + 55041 0.74 0.42661
Target:  5'- gGggUCGGGGCCGGGGCCUgccacaggcGGCCGUa -3'
miRNA:   3'- gCgaAGUUCUGGUUCCGGGa--------CCGGCA- -5'
29024 3' -57.6 NC_006146.1 + 55402 0.67 0.803394
Target:  5'- uGCUcCGGGACCccAGGacguaCCUGGCUGg -3'
miRNA:   3'- gCGAaGUUCUGGu-UCCg----GGACCGGCa -5'
29024 3' -57.6 NC_006146.1 + 55480 0.73 0.471769
Target:  5'- cCGCgggCGAGAaCGAGGCCC-GGCCGc -3'
miRNA:   3'- -GCGaa-GUUCUgGUUCCGGGaCCGGCa -5'
29024 3' -57.6 NC_006146.1 + 55907 0.67 0.803394
Target:  5'- aGCUcCAcGGCCAuGGCCUUgauguccgcGGCCGUg -3'
miRNA:   3'- gCGAaGUuCUGGUuCCGGGA---------CCGGCA- -5'
29024 3' -57.6 NC_006146.1 + 56133 0.68 0.767073
Target:  5'- cCGCgggcccCGAGACCGAGaGCaCCUccccgcGGCCGUc -3'
miRNA:   3'- -GCGaa----GUUCUGGUUC-CG-GGA------CCGGCA- -5'
29024 3' -57.6 NC_006146.1 + 56304 0.68 0.776351
Target:  5'- cCGCcUCGAGGu---GGCCCaGGCCGUa -3'
miRNA:   3'- -GCGaAGUUCUgguuCCGGGaCCGGCA- -5'
29024 3' -57.6 NC_006146.1 + 57901 0.67 0.811251
Target:  5'- uCGCcUCAAGGCCGA-GUCCgucacgcgcacggUGGCCGa -3'
miRNA:   3'- -GCGaAGUUCUGGUUcCGGG-------------ACCGGCa -5'
29024 3' -57.6 NC_006146.1 + 58077 0.67 0.785503
Target:  5'- uGCacCGGGACauuGGCCCcGGCCGg -3'
miRNA:   3'- gCGaaGUUCUGguuCCGGGaCCGGCa -5'
29024 3' -57.6 NC_006146.1 + 58309 0.67 0.79452
Target:  5'- gCGCUUC---GCCGGGGuggagaacuccaCCCUGGCCa- -3'
miRNA:   3'- -GCGAAGuucUGGUUCC------------GGGACCGGca -5'
29024 3' -57.6 NC_006146.1 + 61293 1.07 0.002979
Target:  5'- cCGCUUCAAGACCAAGGCCCUGGCCGUc -3'
miRNA:   3'- -GCGAAGUUCUGGUUCCGGGACCGGCA- -5'
29024 3' -57.6 NC_006146.1 + 61453 0.66 0.837292
Target:  5'- aGCUUUGAGGugucucCCGAcGCCgUGGCCGa -3'
miRNA:   3'- gCGAAGUUCU------GGUUcCGGgACCGGCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.