miRNA display CGI


Results 21 - 40 of 142 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29024 3' -57.6 NC_006146.1 + 21061 0.86 0.082067
Target:  5'- gCGCUUC---GCCGAGGCCCUGGCCGc -3'
miRNA:   3'- -GCGAAGuucUGGUUCCGGGACCGGCa -5'
29024 3' -57.6 NC_006146.1 + 21690 0.67 0.803394
Target:  5'- gGCgcCGGGGCCuuucAGGCCCUcgGGCCc- -3'
miRNA:   3'- gCGaaGUUCUGGu---UCCGGGA--CCGGca -5'
29024 3' -57.6 NC_006146.1 + 21968 0.67 0.829073
Target:  5'- aGCaagCGAGACCAgcccagAGGCCCgagguugGaGCCGg -3'
miRNA:   3'- gCGaa-GUUCUGGU------UCCGGGa------C-CGGCa -5'
29024 3' -57.6 NC_006146.1 + 23449 0.79 0.21622
Target:  5'- gGCUgcccgUCucGGCCuacGAGGCCCUGGCCGUg -3'
miRNA:   3'- gCGA-----AGuuCUGG---UUCCGGGACCGGCA- -5'
29024 3' -57.6 NC_006146.1 + 24257 0.66 0.863833
Target:  5'- uGUUUUcuGACCAuGGacccaggccucgugaCCCUGGCCGg -3'
miRNA:   3'- gCGAAGuuCUGGUuCC---------------GGGACCGGCa -5'
29024 3' -57.6 NC_006146.1 + 24768 0.67 0.803394
Target:  5'- gGCgcCGGGGCCuuucAGGCCCUcgGGCCc- -3'
miRNA:   3'- gCGaaGUUCUGGu---UCCGGGA--CCGGca -5'
29024 3' -57.6 NC_006146.1 + 25046 0.67 0.829073
Target:  5'- aGCaagCGAGACCAgcccagAGGCCCgagguugGaGCCGg -3'
miRNA:   3'- gCGaa-GUUCUGGU------UCCGGGa------C-CGGCa -5'
29024 3' -57.6 NC_006146.1 + 25641 0.73 0.444371
Target:  5'- aGCUcCAAGAUCAcGGCgCUGGUCGUg -3'
miRNA:   3'- gCGAaGUUCUGGUuCCGgGACCGGCA- -5'
29024 3' -57.6 NC_006146.1 + 27846 0.67 0.803394
Target:  5'- gGCgcCGGGGCCuuucAGGCCCUcgGGCCc- -3'
miRNA:   3'- gCGaaGUUCUGGu---UCCGGGA--CCGGca -5'
29024 3' -57.6 NC_006146.1 + 28081 0.7 0.638998
Target:  5'- gGCUUCGGGGCauucuuGAGGCCCgGGUgGg -3'
miRNA:   3'- gCGAAGUUCUGg-----UUCCGGGaCCGgCa -5'
29024 3' -57.6 NC_006146.1 + 28124 0.67 0.829073
Target:  5'- aGCaagCGAGACCAgcccagAGGCCCgagguugGaGCCGg -3'
miRNA:   3'- gCGaa-GUUCUGGU------UCCGGGa------C-CGGCa -5'
29024 3' -57.6 NC_006146.1 + 31464 0.68 0.728875
Target:  5'- aGCUcUCAGGuACCA--GUCCUGGCUGUg -3'
miRNA:   3'- gCGA-AGUUC-UGGUucCGGGACCGGCA- -5'
29024 3' -57.6 NC_006146.1 + 31624 0.68 0.767073
Target:  5'- gGC-UCAAGGCC-GGGCCCUcuGCCa- -3'
miRNA:   3'- gCGaAGUUCUGGuUCCGGGAc-CGGca -5'
29024 3' -57.6 NC_006146.1 + 32025 0.68 0.757677
Target:  5'- gGCcUCGGGA-CGAGGCgCUGGCCc- -3'
miRNA:   3'- gCGaAGUUCUgGUUCCGgGACCGGca -5'
29024 3' -57.6 NC_006146.1 + 32136 0.66 0.868278
Target:  5'- aCGUagCAGGuuaGCCAGGGCCgUGGCa-- -3'
miRNA:   3'- -GCGaaGUUC---UGGUUCCGGgACCGgca -5'
29024 3' -57.6 NC_006146.1 + 40577 0.66 0.845329
Target:  5'- aCGCUgauGAGGuCCu-GGCCCUGGgCGg -3'
miRNA:   3'- -GCGAag-UUCU-GGuuCCGGGACCgGCa -5'
29024 3' -57.6 NC_006146.1 + 41331 0.68 0.780027
Target:  5'- uGUUUCGcgccccaaccuaucuGGcCCAGGGCCUggcgguggUGGCCGUg -3'
miRNA:   3'- gCGAAGU---------------UCuGGUUCCGGG--------ACCGGCA- -5'
29024 3' -57.6 NC_006146.1 + 41588 0.7 0.659219
Target:  5'- gGCUggcCGAGGCggaGAGGCCCggggGGCUGg -3'
miRNA:   3'- gCGAa--GUUCUGg--UUCCGGGa---CCGGCa -5'
29024 3' -57.6 NC_006146.1 + 41764 0.68 0.767073
Target:  5'- gGCUUCcc-GCCgGAGGCCCUGcGCCc- -3'
miRNA:   3'- gCGAAGuucUGG-UUCCGGGAC-CGGca -5'
29024 3' -57.6 NC_006146.1 + 42824 0.69 0.689369
Target:  5'- aGCguguagacCAGGAUCAGGGCCUcgagGGCCGc -3'
miRNA:   3'- gCGaa------GUUCUGGUUCCGGGa---CCGGCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.