miRNA display CGI


Results 1 - 20 of 142 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29024 3' -57.6 NC_006146.1 + 505 0.66 0.852401
Target:  5'- cCGCcccCGAGGCCcccagggGAGGCCC-GGCCu- -3'
miRNA:   3'- -GCGaa-GUUCUGG-------UUCCGGGaCCGGca -5'
29024 3' -57.6 NC_006146.1 + 1436 0.66 0.852401
Target:  5'- cCGCcccCGAGGCCcccagggGAGGCCC-GGCCu- -3'
miRNA:   3'- -GCGaa-GUUCUGG-------UUCCGGGaCCGGca -5'
29024 3' -57.6 NC_006146.1 + 2368 0.66 0.852401
Target:  5'- cCGCcccCGAGGCCcccagggGAGGCCC-GGCCu- -3'
miRNA:   3'- -GCGaa-GUUCUGG-------UUCCGGGaCCGGca -5'
29024 3' -57.6 NC_006146.1 + 2811 0.66 0.845329
Target:  5'- gGcCUUCcAGACCAAGGCggUGGCgGa -3'
miRNA:   3'- gC-GAAGuUCUGGUUCCGggACCGgCa -5'
29024 3' -57.6 NC_006146.1 + 3300 0.66 0.852401
Target:  5'- cCGCcccCGAGGCCcccagggGAGGCCC-GGCCu- -3'
miRNA:   3'- -GCGaa-GUUCUGG-------UUCCGGGaCCGGca -5'
29024 3' -57.6 NC_006146.1 + 6426 0.67 0.812116
Target:  5'- gGCc-CAGGGCCAuguGGGCCCUGGgguCCa- -3'
miRNA:   3'- gCGaaGUUCUGGU---UCCGGGACC---GGca -5'
29024 3' -57.6 NC_006146.1 + 11421 0.68 0.776351
Target:  5'- aGCcugCAGGACC-AGGCCaaggUGGCCa- -3'
miRNA:   3'- gCGaa-GUUCUGGuUCCGGg---ACCGGca -5'
29024 3' -57.6 NC_006146.1 + 12071 0.78 0.261856
Target:  5'- uCGCUUUgcgAGGGCC-GGGCCCcGGCCGUg -3'
miRNA:   3'- -GCGAAG---UUCUGGuUCCGGGaCCGGCA- -5'
29024 3' -57.6 NC_006146.1 + 12455 0.67 0.803394
Target:  5'- gGCgcCGGGGCCuuucAGGCCCUcgGGCCc- -3'
miRNA:   3'- gCGaaGUUCUGGu---UCCGGGA--CCGGca -5'
29024 3' -57.6 NC_006146.1 + 12734 0.67 0.829073
Target:  5'- aGCaagCGAGACCAgcccagAGGCCCgagguugGaGCCGg -3'
miRNA:   3'- gCGaa-GUUCUGGU------UCCGGGa------C-CGGCa -5'
29024 3' -57.6 NC_006146.1 + 14837 0.66 0.868278
Target:  5'- gGUcUCGGGcCCGGGGCCgCgggaGGCCGa -3'
miRNA:   3'- gCGaAGUUCuGGUUCCGG-Ga---CCGGCa -5'
29024 3' -57.6 NC_006146.1 + 15036 0.7 0.638998
Target:  5'- gGCgccu-GGCCAGGGCCCgccgGGCCu- -3'
miRNA:   3'- gCGaaguuCUGGUUCCGGGa---CCGGca -5'
29024 3' -57.6 NC_006146.1 + 15534 0.67 0.803394
Target:  5'- gGCgcCGGGGCCuuucAGGCCCUcgGGCCc- -3'
miRNA:   3'- gCGaaGUUCUGGu---UCCGGGA--CCGGca -5'
29024 3' -57.6 NC_006146.1 + 15699 0.66 0.837292
Target:  5'- -cCUUCAuca-CGGGGCCaCUGGCCGa -3'
miRNA:   3'- gcGAAGUucugGUUCCGG-GACCGGCa -5'
29024 3' -57.6 NC_006146.1 + 15813 0.67 0.829073
Target:  5'- aGCaagCGAGACCAgcccagAGGCCCgagguugGaGCCGg -3'
miRNA:   3'- gCGaa-GUUCUGGU------UCCGGGa------C-CGGCa -5'
29024 3' -57.6 NC_006146.1 + 15896 0.68 0.725951
Target:  5'- uCGCUggccUCGAG-CCAgcaacuucugugccGGGCCCUgcgcgaGGCCGUg -3'
miRNA:   3'- -GCGA----AGUUCuGGU--------------UCCGGGA------CCGGCA- -5'
29024 3' -57.6 NC_006146.1 + 18612 0.67 0.803394
Target:  5'- gGCgcCGGGGCCuuucAGGCCCUcgGGCCc- -3'
miRNA:   3'- gCGaaGUUCUGGu---UCCGGGA--CCGGca -5'
29024 3' -57.6 NC_006146.1 + 18891 0.67 0.829073
Target:  5'- aGCaagCGAGACCAgcccagAGGCCCgagguugGaGCCGg -3'
miRNA:   3'- gCGaa-GUUCUGGU------UCCGGGa------C-CGGCa -5'
29024 3' -57.6 NC_006146.1 + 20226 0.66 0.868278
Target:  5'- uGCgugCAGGAUUc-GGCCCUGGUCa- -3'
miRNA:   3'- gCGaa-GUUCUGGuuCCGGGACCGGca -5'
29024 3' -57.6 NC_006146.1 + 20893 0.69 0.679354
Target:  5'- aGCgggcCAAGGCCuucgugGAGGCCCUgaguccGGCCGa -3'
miRNA:   3'- gCGaa--GUUCUGG------UUCCGGGA------CCGGCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.