miRNA display CGI


Results 1 - 20 of 142 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29024 3' -57.6 NC_006146.1 + 61293 1.07 0.002979
Target:  5'- cCGCUUCAAGACCAAGGCCCUGGCCGUc -3'
miRNA:   3'- -GCGAAGUUCUGGUUCCGGGACCGGCA- -5'
29024 3' -57.6 NC_006146.1 + 21061 0.86 0.082067
Target:  5'- gCGCUUC---GCCGAGGCCCUGGCCGc -3'
miRNA:   3'- -GCGAAGuucUGGUUCCGGGACCGGCa -5'
29024 3' -57.6 NC_006146.1 + 46118 0.8 0.196064
Target:  5'- aGCagCAGGcauGCCcGGGCCCUGGCCGUg -3'
miRNA:   3'- gCGaaGUUC---UGGuUCCGGGACCGGCA- -5'
29024 3' -57.6 NC_006146.1 + 23449 0.79 0.21622
Target:  5'- gGCUgcccgUCucGGCCuacGAGGCCCUGGCCGUg -3'
miRNA:   3'- gCGA-----AGuuCUGG---UUCCGGGACCGGCA- -5'
29024 3' -57.6 NC_006146.1 + 117713 0.79 0.226949
Target:  5'- cCGCccccCAAGGCCGGGGCCgaGGCCGa -3'
miRNA:   3'- -GCGaa--GUUCUGGUUCCGGgaCCGGCa -5'
29024 3' -57.6 NC_006146.1 + 127767 0.78 0.243883
Target:  5'- uCGCcgaccUCAGGGCCAAGGCaCCUGGCgGa -3'
miRNA:   3'- -GCGa----AGUUCUGGUUCCG-GGACCGgCa -5'
29024 3' -57.6 NC_006146.1 + 12071 0.78 0.261856
Target:  5'- uCGCUUUgcgAGGGCC-GGGCCCcGGCCGUg -3'
miRNA:   3'- -GCGAAG---UUCUGGuUCCGGGaCCGGCA- -5'
29024 3' -57.6 NC_006146.1 + 114702 0.77 0.301008
Target:  5'- gGCUcguccgCGAGACCcGGGCCCUGGCgGc -3'
miRNA:   3'- gCGAa-----GUUCUGGuUCCGGGACCGgCa -5'
29024 3' -57.6 NC_006146.1 + 167517 0.74 0.400777
Target:  5'- aCGCUUCAGGGCCuguAGGaCgCCgcGGCCGUu -3'
miRNA:   3'- -GCGAAGUUCUGGu--UCC-G-GGa-CCGGCA- -5'
29024 3' -57.6 NC_006146.1 + 74717 0.74 0.417889
Target:  5'- aCGC-UCAGGGCCAgaaAGGCCCUGGagGg -3'
miRNA:   3'- -GCGaAGUUCUGGU---UCCGGGACCggCa -5'
29024 3' -57.6 NC_006146.1 + 55041 0.74 0.42661
Target:  5'- gGggUCGGGGCCGGGGCCUgccacaggcGGCCGUa -3'
miRNA:   3'- gCgaAGUUCUGGUUCCGGGa--------CCGGCA- -5'
29024 3' -57.6 NC_006146.1 + 25641 0.73 0.444371
Target:  5'- aGCUcCAAGAUCAcGGCgCUGGUCGUg -3'
miRNA:   3'- gCGAaGUUCUGGUuCCGgGACCGGCA- -5'
29024 3' -57.6 NC_006146.1 + 121340 0.73 0.46254
Target:  5'- ---aUCGAGGCCAugcuGGgCCUGGCCGg -3'
miRNA:   3'- gcgaAGUUCUGGUu---CCgGGACCGGCa -5'
29024 3' -57.6 NC_006146.1 + 55480 0.73 0.471769
Target:  5'- cCGCgggCGAGAaCGAGGCCC-GGCCGc -3'
miRNA:   3'- -GCGaa-GUUCUgGUUCCGGGaCCGGCa -5'
29024 3' -57.6 NC_006146.1 + 61927 0.72 0.538737
Target:  5'- gGCcaUCAGGGgcuCCAGGGCCCUGGUCc- -3'
miRNA:   3'- gCGa-AGUUCU---GGUUCCGGGACCGGca -5'
29024 3' -57.6 NC_006146.1 + 77455 0.72 0.54267
Target:  5'- aGCUcCAAGcuggccaugaccauaGCCAAGGCCCaggGGCUGUc -3'
miRNA:   3'- gCGAaGUUC---------------UGGUUCCGGGa--CCGGCA- -5'
29024 3' -57.6 NC_006146.1 + 141885 0.71 0.568449
Target:  5'- uGCUg-GGGACCAGGGCcuCCUGGgCGUc -3'
miRNA:   3'- gCGAagUUCUGGUUCCG--GGACCgGCA- -5'
29024 3' -57.6 NC_006146.1 + 148041 0.71 0.568449
Target:  5'- uGCUg-GGGACCAGGGCcuCCUGGgCGUc -3'
miRNA:   3'- gCGAagUUCUGGUUCCG--GGACCgGCA- -5'
29024 3' -57.6 NC_006146.1 + 151119 0.71 0.568449
Target:  5'- uGCUg-GGGACCAGGGCcuCCUGGgCGUc -3'
miRNA:   3'- gCGAagUUCUGGUUCCG--GGACCgGCA- -5'
29024 3' -57.6 NC_006146.1 + 157275 0.71 0.568449
Target:  5'- uGCUg-GGGACCAGGGCcuCCUGGgCGUc -3'
miRNA:   3'- gCGAagUUCUGGUUCCG--GGACCgGCA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.