Results 21 - 40 of 142 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29024 | 3' | -57.6 | NC_006146.1 | + | 154197 | 0.71 | 0.568449 |
Target: 5'- uGCUg-GGGACCAGGGCcuCCUGGgCGUc -3' miRNA: 3'- gCGAagUUCUGGUUCCG--GGACCgGCA- -5' |
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29024 | 3' | -57.6 | NC_006146.1 | + | 157275 | 0.71 | 0.568449 |
Target: 5'- uGCUg-GGGACCAGGGCcuCCUGGgCGUc -3' miRNA: 3'- gCGAagUUCUGGUUCCG--GGACCgGCA- -5' |
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29024 | 3' | -57.6 | NC_006146.1 | + | 47198 | 0.71 | 0.568449 |
Target: 5'- cCGCccCGAGcGCCAGGcCCCUGGCCGc -3' miRNA: 3'- -GCGaaGUUC-UGGUUCcGGGACCGGCa -5' |
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29024 | 3' | -57.6 | NC_006146.1 | + | 159896 | 0.71 | 0.568449 |
Target: 5'- gGCcUCGAGGCCGGGGCCCUcgaagauggggGGCa-- -3' miRNA: 3'- gCGaAGUUCUGGUUCCGGGA-----------CCGgca -5' |
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29024 | 3' | -57.6 | NC_006146.1 | + | 68915 | 0.71 | 0.568449 |
Target: 5'- gCGCUcaaaauggaCGAGACCGGGGCCUgGGCCc- -3' miRNA: 3'- -GCGAa--------GUUCUGGUUCCGGGaCCGGca -5' |
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29024 | 3' | -57.6 | NC_006146.1 | + | 45405 | 0.71 | 0.578449 |
Target: 5'- aGCacgUCGguGGGCCAgcgcgAGGCCCcGGCCGg -3' miRNA: 3'- gCGa--AGU--UCUGGU-----UCCGGGaCCGGCa -5' |
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29024 | 3' | -57.6 | NC_006146.1 | + | 145128 | 0.71 | 0.598554 |
Target: 5'- gGCcu--GGGCC-AGGCUCUGGCCGg -3' miRNA: 3'- gCGaaguUCUGGuUCCGGGACCGGCa -5' |
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29024 | 3' | -57.6 | NC_006146.1 | + | 109276 | 0.71 | 0.612689 |
Target: 5'- uGCUUCAggucguagcugggagGGAUCucGGCCCcGGCCGc -3' miRNA: 3'- gCGAAGU---------------UCUGGuuCCGGGaCCGGCa -5' |
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29024 | 3' | -57.6 | NC_006146.1 | + | 153300 | 0.7 | 0.618756 |
Target: 5'- uGCUcCAGGcACC-AGGCCCgGGCCa- -3' miRNA: 3'- gCGAaGUUC-UGGuUCCGGGaCCGGca -5' |
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29024 | 3' | -57.6 | NC_006146.1 | + | 89768 | 0.7 | 0.618756 |
Target: 5'- gGCggaaaUCGAGGacgaGGGGCCCaUGGCCGUg -3' miRNA: 3'- gCGa----AGUUCUgg--UUCCGGG-ACCGGCA- -5' |
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29024 | 3' | -57.6 | NC_006146.1 | + | 123496 | 0.7 | 0.618757 |
Target: 5'- aGCU--GAGGCU--GGCCCUGGCCa- -3' miRNA: 3'- gCGAagUUCUGGuuCCGGGACCGGca -5' |
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29024 | 3' | -57.6 | NC_006146.1 | + | 115374 | 0.7 | 0.628876 |
Target: 5'- gGCggCGGaGCUgGAGGCCCUGGCCGc -3' miRNA: 3'- gCGaaGUUcUGG-UUCCGGGACCGGCa -5' |
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29024 | 3' | -57.6 | NC_006146.1 | + | 131631 | 0.7 | 0.629889 |
Target: 5'- cCGUcUCGAGuCCGGGGCCCacacccguuccucagGGCCGa -3' miRNA: 3'- -GCGaAGUUCuGGUUCCGGGa--------------CCGGCa -5' |
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29024 | 3' | -57.6 | NC_006146.1 | + | 15036 | 0.7 | 0.638998 |
Target: 5'- gGCgccu-GGCCAGGGCCCgccgGGCCu- -3' miRNA: 3'- gCGaaguuCUGGUUCCGGGa---CCGGca -5' |
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29024 | 3' | -57.6 | NC_006146.1 | + | 155853 | 0.7 | 0.638998 |
Target: 5'- uGCcuccucgCAGGcCCGgcGGGCCCUGGCCa- -3' miRNA: 3'- gCGaa-----GUUCuGGU--UCCGGGACCGGca -5' |
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29024 | 3' | -57.6 | NC_006146.1 | + | 28081 | 0.7 | 0.638998 |
Target: 5'- gGCUUCGGGGCauucuuGAGGCCCgGGUgGg -3' miRNA: 3'- gCGAAGUUCUGg-----UUCCGGGaCCGgCa -5' |
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29024 | 3' | -57.6 | NC_006146.1 | + | 41588 | 0.7 | 0.659219 |
Target: 5'- gGCUggcCGAGGCggaGAGGCCCggggGGCUGg -3' miRNA: 3'- gCGAa--GUUCUGg--UUCCGGGa---CCGGCa -5' |
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29024 | 3' | -57.6 | NC_006146.1 | + | 167391 | 0.69 | 0.669301 |
Target: 5'- gGCUcccgagggCGGGGCCGGGGCCUggcgggGGCCa- -3' miRNA: 3'- gCGAa-------GUUCUGGUUCCGGGa-----CCGGca -5' |
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29024 | 3' | -57.6 | NC_006146.1 | + | 169255 | 0.69 | 0.669301 |
Target: 5'- gGCUcccgagggCGGGGCCGGGGCCUggcgggGGCCa- -3' miRNA: 3'- gCGAa-------GUUCUGGUUCCGGGa-----CCGGca -5' |
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29024 | 3' | -57.6 | NC_006146.1 | + | 168323 | 0.69 | 0.669301 |
Target: 5'- gGCUcccgagggCGGGGCCGGGGCCUggcgggGGCCa- -3' miRNA: 3'- gCGAa-------GUUCUGGUUCCGGGa-----CCGGca -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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