Results 21 - 40 of 142 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29024 | 3' | -57.6 | NC_006146.1 | + | 3300 | 0.66 | 0.852401 |
Target: 5'- cCGCcccCGAGGCCcccagggGAGGCCC-GGCCu- -3' miRNA: 3'- -GCGaa-GUUCUGG-------UUCCGGGaCCGGca -5' |
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29024 | 3' | -57.6 | NC_006146.1 | + | 505 | 0.66 | 0.852401 |
Target: 5'- cCGCcccCGAGGCCcccagggGAGGCCC-GGCCu- -3' miRNA: 3'- -GCGaa-GUUCUGG-------UUCCGGGaCCGGca -5' |
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29024 | 3' | -57.6 | NC_006146.1 | + | 1436 | 0.66 | 0.852401 |
Target: 5'- cCGCcccCGAGGCCcccagggGAGGCCC-GGCCu- -3' miRNA: 3'- -GCGaa-GUUCUGG-------UUCCGGGaCCGGca -5' |
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29024 | 3' | -57.6 | NC_006146.1 | + | 79805 | 0.66 | 0.850843 |
Target: 5'- gGCgUCGAGuuGCCAuGGCUuccuccauuugugaCUGGCCGUa -3' miRNA: 3'- gCGaAGUUC--UGGUuCCGG--------------GACCGGCA- -5' |
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29024 | 3' | -57.6 | NC_006146.1 | + | 2811 | 0.66 | 0.845329 |
Target: 5'- gGcCUUCcAGACCAAGGCggUGGCgGa -3' miRNA: 3'- gC-GAAGuUCUGGUUCCGggACCGgCa -5' |
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29024 | 3' | -57.6 | NC_006146.1 | + | 40577 | 0.66 | 0.845329 |
Target: 5'- aCGCUgauGAGGuCCu-GGCCCUGGgCGg -3' miRNA: 3'- -GCGAag-UUCU-GGuuCCGGGACCgGCa -5' |
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29024 | 3' | -57.6 | NC_006146.1 | + | 61453 | 0.66 | 0.837292 |
Target: 5'- aGCUUUGAGGugucucCCGAcGCCgUGGCCGa -3' miRNA: 3'- gCGAAGUUCU------GGUUcCGGgACCGGCa -5' |
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29024 | 3' | -57.6 | NC_006146.1 | + | 15699 | 0.66 | 0.837292 |
Target: 5'- -cCUUCAuca-CGGGGCCaCUGGCCGa -3' miRNA: 3'- gcGAAGUucugGUUCCGG-GACCGGCa -5' |
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29024 | 3' | -57.6 | NC_006146.1 | + | 28124 | 0.67 | 0.829073 |
Target: 5'- aGCaagCGAGACCAgcccagAGGCCCgagguugGaGCCGg -3' miRNA: 3'- gCGaa-GUUCUGGU------UCCGGGa------C-CGGCa -5' |
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29024 | 3' | -57.6 | NC_006146.1 | + | 25046 | 0.67 | 0.829073 |
Target: 5'- aGCaagCGAGACCAgcccagAGGCCCgagguugGaGCCGg -3' miRNA: 3'- gCGaa-GUUCUGGU------UCCGGGa------C-CGGCa -5' |
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29024 | 3' | -57.6 | NC_006146.1 | + | 148145 | 0.67 | 0.829073 |
Target: 5'- gGCUUCGugcuGGUCAGGGCCCgGGUCu- -3' miRNA: 3'- gCGAAGUu---CUGGUUCCGGGaCCGGca -5' |
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29024 | 3' | -57.6 | NC_006146.1 | + | 21968 | 0.67 | 0.829073 |
Target: 5'- aGCaagCGAGACCAgcccagAGGCCCgagguugGaGCCGg -3' miRNA: 3'- gCGaa-GUUCUGGU------UCCGGGa------C-CGGCa -5' |
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29024 | 3' | -57.6 | NC_006146.1 | + | 130089 | 0.67 | 0.829073 |
Target: 5'- aGC-UCAuGGCCAAGGCCaUUGacGCCGg -3' miRNA: 3'- gCGaAGUuCUGGUUCCGG-GAC--CGGCa -5' |
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29024 | 3' | -57.6 | NC_006146.1 | + | 15813 | 0.67 | 0.829073 |
Target: 5'- aGCaagCGAGACCAgcccagAGGCCCgagguugGaGCCGg -3' miRNA: 3'- gCGaa-GUUCUGGU------UCCGGGa------C-CGGCa -5' |
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29024 | 3' | -57.6 | NC_006146.1 | + | 18891 | 0.67 | 0.829073 |
Target: 5'- aGCaagCGAGACCAgcccagAGGCCCgagguugGaGCCGg -3' miRNA: 3'- gCGaa-GUUCUGGU------UCCGGGa------C-CGGCa -5' |
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29024 | 3' | -57.6 | NC_006146.1 | + | 12734 | 0.67 | 0.829073 |
Target: 5'- aGCaagCGAGACCAgcccagAGGCCCgagguugGaGCCGg -3' miRNA: 3'- gCGaa-GUUCUGGU------UCCGGGa------C-CGGCa -5' |
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29024 | 3' | -57.6 | NC_006146.1 | + | 158812 | 0.67 | 0.829073 |
Target: 5'- aGCguguUCAGGcacacgGCCGGGGCCC-GGCCc- -3' miRNA: 3'- gCGa---AGUUC------UGGUUCCGGGaCCGGca -5' |
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29024 | 3' | -57.6 | NC_006146.1 | + | 50718 | 0.67 | 0.829073 |
Target: 5'- cCGggUCAuAGACgAGGGCCC-GGUCGg -3' miRNA: 3'- -GCgaAGU-UCUGgUUCCGGGaCCGGCa -5' |
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29024 | 3' | -57.6 | NC_006146.1 | + | 125941 | 0.67 | 0.829073 |
Target: 5'- cCGCggUCGAGucccCCGGGGCcuccccgcgccCCUGGCCa- -3' miRNA: 3'- -GCGa-AGUUCu---GGUUCCG-----------GGACCGGca -5' |
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29024 | 3' | -57.6 | NC_006146.1 | + | 49746 | 0.67 | 0.829073 |
Target: 5'- uCGUUUCAGGGgCGcgcGGCCCaGGCCc- -3' miRNA: 3'- -GCGAAGUUCUgGUu--CCGGGaCCGGca -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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