miRNA display CGI


Results 21 - 40 of 142 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29024 3' -57.6 NC_006146.1 + 3300 0.66 0.852401
Target:  5'- cCGCcccCGAGGCCcccagggGAGGCCC-GGCCu- -3'
miRNA:   3'- -GCGaa-GUUCUGG-------UUCCGGGaCCGGca -5'
29024 3' -57.6 NC_006146.1 + 505 0.66 0.852401
Target:  5'- cCGCcccCGAGGCCcccagggGAGGCCC-GGCCu- -3'
miRNA:   3'- -GCGaa-GUUCUGG-------UUCCGGGaCCGGca -5'
29024 3' -57.6 NC_006146.1 + 1436 0.66 0.852401
Target:  5'- cCGCcccCGAGGCCcccagggGAGGCCC-GGCCu- -3'
miRNA:   3'- -GCGaa-GUUCUGG-------UUCCGGGaCCGGca -5'
29024 3' -57.6 NC_006146.1 + 79805 0.66 0.850843
Target:  5'- gGCgUCGAGuuGCCAuGGCUuccuccauuugugaCUGGCCGUa -3'
miRNA:   3'- gCGaAGUUC--UGGUuCCGG--------------GACCGGCA- -5'
29024 3' -57.6 NC_006146.1 + 2811 0.66 0.845329
Target:  5'- gGcCUUCcAGACCAAGGCggUGGCgGa -3'
miRNA:   3'- gC-GAAGuUCUGGUUCCGggACCGgCa -5'
29024 3' -57.6 NC_006146.1 + 40577 0.66 0.845329
Target:  5'- aCGCUgauGAGGuCCu-GGCCCUGGgCGg -3'
miRNA:   3'- -GCGAag-UUCU-GGuuCCGGGACCgGCa -5'
29024 3' -57.6 NC_006146.1 + 61453 0.66 0.837292
Target:  5'- aGCUUUGAGGugucucCCGAcGCCgUGGCCGa -3'
miRNA:   3'- gCGAAGUUCU------GGUUcCGGgACCGGCa -5'
29024 3' -57.6 NC_006146.1 + 15699 0.66 0.837292
Target:  5'- -cCUUCAuca-CGGGGCCaCUGGCCGa -3'
miRNA:   3'- gcGAAGUucugGUUCCGG-GACCGGCa -5'
29024 3' -57.6 NC_006146.1 + 28124 0.67 0.829073
Target:  5'- aGCaagCGAGACCAgcccagAGGCCCgagguugGaGCCGg -3'
miRNA:   3'- gCGaa-GUUCUGGU------UCCGGGa------C-CGGCa -5'
29024 3' -57.6 NC_006146.1 + 25046 0.67 0.829073
Target:  5'- aGCaagCGAGACCAgcccagAGGCCCgagguugGaGCCGg -3'
miRNA:   3'- gCGaa-GUUCUGGU------UCCGGGa------C-CGGCa -5'
29024 3' -57.6 NC_006146.1 + 148145 0.67 0.829073
Target:  5'- gGCUUCGugcuGGUCAGGGCCCgGGUCu- -3'
miRNA:   3'- gCGAAGUu---CUGGUUCCGGGaCCGGca -5'
29024 3' -57.6 NC_006146.1 + 21968 0.67 0.829073
Target:  5'- aGCaagCGAGACCAgcccagAGGCCCgagguugGaGCCGg -3'
miRNA:   3'- gCGaa-GUUCUGGU------UCCGGGa------C-CGGCa -5'
29024 3' -57.6 NC_006146.1 + 130089 0.67 0.829073
Target:  5'- aGC-UCAuGGCCAAGGCCaUUGacGCCGg -3'
miRNA:   3'- gCGaAGUuCUGGUUCCGG-GAC--CGGCa -5'
29024 3' -57.6 NC_006146.1 + 15813 0.67 0.829073
Target:  5'- aGCaagCGAGACCAgcccagAGGCCCgagguugGaGCCGg -3'
miRNA:   3'- gCGaa-GUUCUGGU------UCCGGGa------C-CGGCa -5'
29024 3' -57.6 NC_006146.1 + 18891 0.67 0.829073
Target:  5'- aGCaagCGAGACCAgcccagAGGCCCgagguugGaGCCGg -3'
miRNA:   3'- gCGaa-GUUCUGGU------UCCGGGa------C-CGGCa -5'
29024 3' -57.6 NC_006146.1 + 12734 0.67 0.829073
Target:  5'- aGCaagCGAGACCAgcccagAGGCCCgagguugGaGCCGg -3'
miRNA:   3'- gCGaa-GUUCUGGU------UCCGGGa------C-CGGCa -5'
29024 3' -57.6 NC_006146.1 + 158812 0.67 0.829073
Target:  5'- aGCguguUCAGGcacacgGCCGGGGCCC-GGCCc- -3'
miRNA:   3'- gCGa---AGUUC------UGGUUCCGGGaCCGGca -5'
29024 3' -57.6 NC_006146.1 + 50718 0.67 0.829073
Target:  5'- cCGggUCAuAGACgAGGGCCC-GGUCGg -3'
miRNA:   3'- -GCgaAGU-UCUGgUUCCGGGaCCGGCa -5'
29024 3' -57.6 NC_006146.1 + 125941 0.67 0.829073
Target:  5'- cCGCggUCGAGucccCCGGGGCcuccccgcgccCCUGGCCa- -3'
miRNA:   3'- -GCGa-AGUUCu---GGUUCCG-----------GGACCGGca -5'
29024 3' -57.6 NC_006146.1 + 49746 0.67 0.829073
Target:  5'- uCGUUUCAGGGgCGcgcGGCCCaGGCCc- -3'
miRNA:   3'- -GCGAAGUUCUgGUu--CCGGGaCCGGca -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.