Results 41 - 60 of 142 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29024 | 3' | -57.6 | NC_006146.1 | + | 141655 | 0.67 | 0.820678 |
Target: 5'- aCGCUggcacacCGGGccGCCGGGGuCCCUccGGCCGg -3' miRNA: 3'- -GCGAa------GUUC--UGGUUCC-GGGA--CCGGCa -5' |
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29024 | 3' | -57.6 | NC_006146.1 | + | 125480 | 0.67 | 0.820678 |
Target: 5'- -aCUUCAAcccGGCCGGGGCCucgcgCUGGCCc- -3' miRNA: 3'- gcGAAGUU---CUGGUUCCGG-----GACCGGca -5' |
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29024 | 3' | -57.6 | NC_006146.1 | + | 144732 | 0.67 | 0.820678 |
Target: 5'- aCGCUggcacacCGGGccGCCGGGGuCCCUccGGCCGg -3' miRNA: 3'- -GCGAa------GUUC--UGGUUCC-GGGA--CCGGCa -5' |
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29024 | 3' | -57.6 | NC_006146.1 | + | 147810 | 0.67 | 0.820678 |
Target: 5'- aCGCUggcacacCGGGccGCCGGGGuCCCUccGGCCGg -3' miRNA: 3'- -GCGAa------GUUC--UGGUUCC-GGGA--CCGGCa -5' |
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29024 | 3' | -57.6 | NC_006146.1 | + | 150888 | 0.67 | 0.820678 |
Target: 5'- aCGCUggcacacCGGGccGCCGGGGuCCCUccGGCCGg -3' miRNA: 3'- -GCGAa------GUUC--UGGUUCC-GGGA--CCGGCa -5' |
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29024 | 3' | -57.6 | NC_006146.1 | + | 153966 | 0.67 | 0.820678 |
Target: 5'- aCGCUggcacacCGGGccGCCGGGGuCCCUccGGCCGg -3' miRNA: 3'- -GCGAa------GUUC--UGGUUCC-GGGA--CCGGCa -5' |
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29024 | 3' | -57.6 | NC_006146.1 | + | 157044 | 0.67 | 0.820678 |
Target: 5'- aCGCUggcacacCGGGccGCCGGGGuCCCUccGGCCGg -3' miRNA: 3'- -GCGAa------GUUC--UGGUUCC-GGGA--CCGGCa -5' |
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29024 | 3' | -57.6 | NC_006146.1 | + | 61598 | 0.67 | 0.820678 |
Target: 5'- gGCUgCAGcGGCCGcGGCCggGGCCGa -3' miRNA: 3'- gCGAaGUU-CUGGUuCCGGgaCCGGCa -5' |
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29024 | 3' | -57.6 | NC_006146.1 | + | 70157 | 0.67 | 0.820678 |
Target: 5'- gGC-UCcuGGCCGGGGCgCUggUGGCCGg -3' miRNA: 3'- gCGaAGuuCUGGUUCCG-GG--ACCGGCa -5' |
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29024 | 3' | -57.6 | NC_006146.1 | + | 6426 | 0.67 | 0.812116 |
Target: 5'- gGCc-CAGGGCCAuguGGGCCCUGGgguCCa- -3' miRNA: 3'- gCGaaGUUCUGGU---UCCGGGACC---GGca -5' |
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29024 | 3' | -57.6 | NC_006146.1 | + | 123118 | 0.67 | 0.812116 |
Target: 5'- gCGCUagaCGGGGCUuucagacGGCCCUggaGGCCGUa -3' miRNA: 3'- -GCGAa--GUUCUGGuu-----CCGGGA---CCGGCA- -5' |
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29024 | 3' | -57.6 | NC_006146.1 | + | 57901 | 0.67 | 0.811251 |
Target: 5'- uCGCcUCAAGGCCGA-GUCCgucacgcgcacggUGGCCGa -3' miRNA: 3'- -GCGaAGUUCUGGUUcCGGG-------------ACCGGCa -5' |
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29024 | 3' | -57.6 | NC_006146.1 | + | 55402 | 0.67 | 0.803394 |
Target: 5'- uGCUcCGGGACCccAGGacguaCCUGGCUGg -3' miRNA: 3'- gCGAaGUUCUGGu-UCCg----GGACCGGCa -5' |
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29024 | 3' | -57.6 | NC_006146.1 | + | 27846 | 0.67 | 0.803394 |
Target: 5'- gGCgcCGGGGCCuuucAGGCCCUcgGGCCc- -3' miRNA: 3'- gCGaaGUUCUGGu---UCCGGGA--CCGGca -5' |
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29024 | 3' | -57.6 | NC_006146.1 | + | 138751 | 0.67 | 0.803394 |
Target: 5'- aGCUgagCGGccuGCCAcGGCCCUGGCUa- -3' miRNA: 3'- gCGAa--GUUc--UGGUuCCGGGACCGGca -5' |
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29024 | 3' | -57.6 | NC_006146.1 | + | 55907 | 0.67 | 0.803394 |
Target: 5'- aGCUcCAcGGCCAuGGCCUUgauguccgcGGCCGUg -3' miRNA: 3'- gCGAaGUuCUGGUuCCGGGA---------CCGGCA- -5' |
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29024 | 3' | -57.6 | NC_006146.1 | + | 12455 | 0.67 | 0.803394 |
Target: 5'- gGCgcCGGGGCCuuucAGGCCCUcgGGCCc- -3' miRNA: 3'- gCGaaGUUCUGGu---UCCGGGA--CCGGca -5' |
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29024 | 3' | -57.6 | NC_006146.1 | + | 21690 | 0.67 | 0.803394 |
Target: 5'- gGCgcCGGGGCCuuucAGGCCCUcgGGCCc- -3' miRNA: 3'- gCGaaGUUCUGGu---UCCGGGA--CCGGca -5' |
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29024 | 3' | -57.6 | NC_006146.1 | + | 24768 | 0.67 | 0.803394 |
Target: 5'- gGCgcCGGGGCCuuucAGGCCCUcgGGCCc- -3' miRNA: 3'- gCGaaGUUCUGGu---UCCGGGA--CCGGca -5' |
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29024 | 3' | -57.6 | NC_006146.1 | + | 18612 | 0.67 | 0.803394 |
Target: 5'- gGCgcCGGGGCCuuucAGGCCCUcgGGCCc- -3' miRNA: 3'- gCGaaGUUCUGGu---UCCGGGA--CCGGca -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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