miRNA display CGI


Results 21 - 40 of 142 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29024 3' -57.6 NC_006146.1 + 78024 0.66 0.860828
Target:  5'- gGCcuagCAGGuACCuGGGCUCgUGGCCGa -3'
miRNA:   3'- gCGaa--GUUC-UGGuUCCGGG-ACCGGCa -5'
29024 3' -57.6 NC_006146.1 + 110005 0.66 0.868278
Target:  5'- aGCUcCugGAuCCAcuGGGCCCcaGGCCGg -3'
miRNA:   3'- gCGAaGuuCU-GGU--UCCGGGa-CCGGCa -5'
29024 3' -57.6 NC_006146.1 + 49067 0.66 0.860828
Target:  5'- gGCUggaUCGaaggaGGGCUGAGGCUCcGGCUGUg -3'
miRNA:   3'- gCGA---AGU-----UCUGGUUCCGGGaCCGGCA- -5'
29024 3' -57.6 NC_006146.1 + 126241 0.66 0.853177
Target:  5'- cCGUUUUggGAcCCAGGcGCCCgGGCUu- -3'
miRNA:   3'- -GCGAAGuuCU-GGUUC-CGGGaCCGGca -5'
29024 3' -57.6 NC_006146.1 + 114973 0.66 0.853177
Target:  5'- aCGCagCAgcccacggccgcGGACauCAAGGCCaUGGCCGUg -3'
miRNA:   3'- -GCGaaGU------------UCUG--GUUCCGGgACCGGCA- -5'
29024 3' -57.6 NC_006146.1 + 3300 0.66 0.852401
Target:  5'- cCGCcccCGAGGCCcccagggGAGGCCC-GGCCu- -3'
miRNA:   3'- -GCGaa-GUUCUGG-------UUCCGGGaCCGGca -5'
29024 3' -57.6 NC_006146.1 + 2368 0.66 0.852401
Target:  5'- cCGCcccCGAGGCCcccagggGAGGCCC-GGCCu- -3'
miRNA:   3'- -GCGaa-GUUCUGG-------UUCCGGGaCCGGca -5'
29024 3' -57.6 NC_006146.1 + 1436 0.66 0.852401
Target:  5'- cCGCcccCGAGGCCcccagggGAGGCCC-GGCCu- -3'
miRNA:   3'- -GCGaa-GUUCUGG-------UUCCGGGaCCGGca -5'
29024 3' -57.6 NC_006146.1 + 15534 0.67 0.803394
Target:  5'- gGCgcCGGGGCCuuucAGGCCCUcgGGCCc- -3'
miRNA:   3'- gCGaaGUUCUGGu---UCCGGGA--CCGGca -5'
29024 3' -57.6 NC_006146.1 + 150888 0.67 0.820678
Target:  5'- aCGCUggcacacCGGGccGCCGGGGuCCCUccGGCCGg -3'
miRNA:   3'- -GCGAa------GUUC--UGGUUCC-GGGA--CCGGCa -5'
29024 3' -57.6 NC_006146.1 + 18612 0.67 0.803394
Target:  5'- gGCgcCGGGGCCuuucAGGCCCUcgGGCCc- -3'
miRNA:   3'- gCGaaGUUCUGGu---UCCGGGA--CCGGca -5'
29024 3' -57.6 NC_006146.1 + 55402 0.67 0.803394
Target:  5'- uGCUcCGGGACCccAGGacguaCCUGGCUGg -3'
miRNA:   3'- gCGAaGUUCUGGu-UCCg----GGACCGGCa -5'
29024 3' -57.6 NC_006146.1 + 147810 0.67 0.820678
Target:  5'- aCGCUggcacacCGGGccGCCGGGGuCCCUccGGCCGg -3'
miRNA:   3'- -GCGAa------GUUC--UGGUUCC-GGGA--CCGGCa -5'
29024 3' -57.6 NC_006146.1 + 144732 0.67 0.820678
Target:  5'- aCGCUggcacacCGGGccGCCGGGGuCCCUccGGCCGg -3'
miRNA:   3'- -GCGAa------GUUC--UGGUUCC-GGGA--CCGGCa -5'
29024 3' -57.6 NC_006146.1 + 141655 0.67 0.820678
Target:  5'- aCGCUggcacacCGGGccGCCGGGGuCCCUccGGCCGg -3'
miRNA:   3'- -GCGAa------GUUC--UGGUUCC-GGGA--CCGGCa -5'
29024 3' -57.6 NC_006146.1 + 125480 0.67 0.820678
Target:  5'- -aCUUCAAcccGGCCGGGGCCucgcgCUGGCCc- -3'
miRNA:   3'- gcGAAGUU---CUGGUUCCGG-----GACCGGca -5'
29024 3' -57.6 NC_006146.1 + 61598 0.67 0.820678
Target:  5'- gGCUgCAGcGGCCGcGGCCggGGCCGa -3'
miRNA:   3'- gCGAaGUU-CUGGUuCCGGgaCCGGCa -5'
29024 3' -57.6 NC_006146.1 + 123118 0.67 0.812116
Target:  5'- gCGCUagaCGGGGCUuucagacGGCCCUggaGGCCGUa -3'
miRNA:   3'- -GCGAa--GUUCUGGuu-----CCGGGA---CCGGCA- -5'
29024 3' -57.6 NC_006146.1 + 6426 0.67 0.812116
Target:  5'- gGCc-CAGGGCCAuguGGGCCCUGGgguCCa- -3'
miRNA:   3'- gCGaaGUUCUGGU---UCCGGGACC---GGca -5'
29024 3' -57.6 NC_006146.1 + 138751 0.67 0.803394
Target:  5'- aGCUgagCGGccuGCCAcGGCCCUGGCUa- -3'
miRNA:   3'- gCGAa--GUUc--UGGUuCCGGGACCGGca -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.