miRNA display CGI


Results 21 - 40 of 142 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29024 3' -57.6 NC_006146.1 + 69870 0.69 0.689368
Target:  5'- gGCguaGAGGCCcAGGUCCacGGCCGUg -3'
miRNA:   3'- gCGaagUUCUGGuUCCGGGa-CCGGCA- -5'
29024 3' -57.6 NC_006146.1 + 170186 0.69 0.669301
Target:  5'- gGCUcccgagggCGGGGCCGGGGCCUggcgggGGCCa- -3'
miRNA:   3'- gCGAa-------GUUCUGGUUCCGGGa-----CCGGca -5'
29024 3' -57.6 NC_006146.1 + 145128 0.71 0.598554
Target:  5'- gGCcu--GGGCC-AGGCUCUGGCCGg -3'
miRNA:   3'- gCGaaguUCUGGuUCCGGGACCGGCa -5'
29024 3' -57.6 NC_006146.1 + 74717 0.74 0.417889
Target:  5'- aCGC-UCAGGGCCAgaaAGGCCCUGGagGg -3'
miRNA:   3'- -GCGaAGUUCUGGU---UCCGGGACCggCa -5'
29024 3' -57.6 NC_006146.1 + 58309 0.67 0.79452
Target:  5'- gCGCUUC---GCCGGGGuggagaacuccaCCCUGGCCa- -3'
miRNA:   3'- -GCGAAGuucUGGUUCC------------GGGACCGGca -5'
29024 3' -57.6 NC_006146.1 + 74901 0.68 0.738569
Target:  5'- aGCggUCGAGAucCCAAGGCCCcaGGCaGUa -3'
miRNA:   3'- gCGa-AGUUCU--GGUUCCGGGa-CCGgCA- -5'
29024 3' -57.6 NC_006146.1 + 168323 0.69 0.669301
Target:  5'- gGCUcccgagggCGGGGCCGGGGCCUggcgggGGCCa- -3'
miRNA:   3'- gCGAa-------GUUCUGGUUCCGGGa-----CCGGca -5'
29024 3' -57.6 NC_006146.1 + 127767 0.78 0.243883
Target:  5'- uCGCcgaccUCAGGGCCAAGGCaCCUGGCgGa -3'
miRNA:   3'- -GCGa----AGUUCUGGUUCCG-GGACCGgCa -5'
29024 3' -57.6 NC_006146.1 + 87184 0.68 0.728875
Target:  5'- uGUUUUu-GGCCAGGGUCCUacaGGCUGUg -3'
miRNA:   3'- gCGAAGuuCUGGUUCCGGGA---CCGGCA- -5'
29024 3' -57.6 NC_006146.1 + 46118 0.8 0.196064
Target:  5'- aGCagCAGGcauGCCcGGGCCCUGGCCGUg -3'
miRNA:   3'- gCGaaGUUC---UGGuUCCGGGACCGGCA- -5'
29024 3' -57.6 NC_006146.1 + 169255 0.69 0.669301
Target:  5'- gGCUcccgagggCGGGGCCGGGGCCUggcgggGGCCa- -3'
miRNA:   3'- gCGAa-------GUUCUGGUUCCGGGa-----CCGGca -5'
29024 3' -57.6 NC_006146.1 + 108958 0.69 0.719099
Target:  5'- uGCaccgUCccguGGACCAGGGCCCUGgaGCCc- -3'
miRNA:   3'- gCGa---AGu---UCUGGUUCCGGGAC--CGGca -5'
29024 3' -57.6 NC_006146.1 + 155853 0.7 0.638998
Target:  5'- uGCcuccucgCAGGcCCGgcGGGCCCUGGCCa- -3'
miRNA:   3'- gCGaa-----GUUCuGGU--UCCGGGACCGGca -5'
29024 3' -57.6 NC_006146.1 + 109276 0.71 0.612689
Target:  5'- uGCUUCAggucguagcugggagGGAUCucGGCCCcGGCCGc -3'
miRNA:   3'- gCGAAGU---------------UCUGGuuCCGGGaCCGGCa -5'
29024 3' -57.6 NC_006146.1 + 47198 0.71 0.568449
Target:  5'- cCGCccCGAGcGCCAGGcCCCUGGCCGc -3'
miRNA:   3'- -GCGaaGUUC-UGGUUCcGGGACCGGCa -5'
29024 3' -57.6 NC_006146.1 + 55041 0.74 0.42661
Target:  5'- gGggUCGGGGCCGGGGCCUgccacaggcGGCCGUa -3'
miRNA:   3'- gCgaAGUUCUGGUUCCGGGa--------CCGGCA- -5'
29024 3' -57.6 NC_006146.1 + 18612 0.67 0.803394
Target:  5'- gGCgcCGGGGCCuuucAGGCCCUcgGGCCc- -3'
miRNA:   3'- gCGaaGUUCUGGu---UCCGGGA--CCGGca -5'
29024 3' -57.6 NC_006146.1 + 55907 0.67 0.803394
Target:  5'- aGCUcCAcGGCCAuGGCCUUgauguccgcGGCCGUg -3'
miRNA:   3'- gCGAaGUuCUGGUuCCGGGA---------CCGGCA- -5'
29024 3' -57.6 NC_006146.1 + 56133 0.68 0.767073
Target:  5'- cCGCgggcccCGAGACCGAGaGCaCCUccccgcGGCCGUc -3'
miRNA:   3'- -GCGaa----GUUCUGGUUC-CG-GGA------CCGGCA- -5'
29024 3' -57.6 NC_006146.1 + 44703 0.68 0.738569
Target:  5'- gGCggCGGuGGCCGuGGCCCccgcUGGCCGg -3'
miRNA:   3'- gCGaaGUU-CUGGUuCCGGG----ACCGGCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.