miRNA display CGI


Results 1 - 20 of 142 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29024 3' -57.6 NC_006146.1 + 61293 1.07 0.002979
Target:  5'- cCGCUUCAAGACCAAGGCCCUGGCCGUc -3'
miRNA:   3'- -GCGAAGUUCUGGUUCCGGGACCGGCA- -5'
29024 3' -57.6 NC_006146.1 + 168323 0.69 0.669301
Target:  5'- gGCUcccgagggCGGGGCCGGGGCCUggcgggGGCCa- -3'
miRNA:   3'- gCGAa-------GUUCUGGUUCCGGGa-----CCGGca -5'
29024 3' -57.6 NC_006146.1 + 170186 0.69 0.669301
Target:  5'- gGCUcccgagggCGGGGCCGGGGCCUggcgggGGCCa- -3'
miRNA:   3'- gCGAa-------GUUCUGGUUCCGGGa-----CCGGca -5'
29024 3' -57.6 NC_006146.1 + 67190 0.66 0.868278
Target:  5'- uGCUccUUggGAuuCCAcuGGCCgUGGCCGg -3'
miRNA:   3'- gCGA--AGuuCU--GGUu-CCGGgACCGGCa -5'
29024 3' -57.6 NC_006146.1 + 55041 0.74 0.42661
Target:  5'- gGggUCGGGGCCGGGGCCUgccacaggcGGCCGUa -3'
miRNA:   3'- gCgaAGUUCUGGUUCCGGGa--------CCGGCA- -5'
29024 3' -57.6 NC_006146.1 + 55480 0.73 0.471769
Target:  5'- cCGCgggCGAGAaCGAGGCCC-GGCCGc -3'
miRNA:   3'- -GCGaa-GUUCUgGUUCCGGGaCCGGCa -5'
29024 3' -57.6 NC_006146.1 + 47198 0.71 0.568449
Target:  5'- cCGCccCGAGcGCCAGGcCCCUGGCCGc -3'
miRNA:   3'- -GCGaaGUUC-UGGUUCcGGGACCGGCa -5'
29024 3' -57.6 NC_006146.1 + 159896 0.71 0.568449
Target:  5'- gGCcUCGAGGCCGGGGCCCUcgaagauggggGGCa-- -3'
miRNA:   3'- gCGaAGUUCUGGUUCCGGGA-----------CCGgca -5'
29024 3' -57.6 NC_006146.1 + 109276 0.71 0.612689
Target:  5'- uGCUUCAggucguagcugggagGGAUCucGGCCCcGGCCGc -3'
miRNA:   3'- gCGAAGU---------------UCUGGuuCCGGGaCCGGCa -5'
29024 3' -57.6 NC_006146.1 + 167391 0.69 0.669301
Target:  5'- gGCUcccgagggCGGGGCCGGGGCCUggcgggGGCCa- -3'
miRNA:   3'- gCGAa-------GUUCUGGUUCCGGGa-----CCGGca -5'
29024 3' -57.6 NC_006146.1 + 89768 0.7 0.618756
Target:  5'- gGCggaaaUCGAGGacgaGGGGCCCaUGGCCGUg -3'
miRNA:   3'- gCGa----AGUUCUgg--UUCCGGG-ACCGGCA- -5'
29024 3' -57.6 NC_006146.1 + 145128 0.71 0.598554
Target:  5'- gGCcu--GGGCC-AGGCUCUGGCCGg -3'
miRNA:   3'- gCGaaguUCUGGuUCCGGGACCGGCa -5'
29024 3' -57.6 NC_006146.1 + 46118 0.8 0.196064
Target:  5'- aGCagCAGGcauGCCcGGGCCCUGGCCGUg -3'
miRNA:   3'- gCGaaGUUC---UGGuUCCGGGACCGGCA- -5'
29024 3' -57.6 NC_006146.1 + 155853 0.7 0.638998
Target:  5'- uGCcuccucgCAGGcCCGgcGGGCCCUGGCCa- -3'
miRNA:   3'- gCGaa-----GUUCuGGU--UCCGGGACCGGca -5'
29024 3' -57.6 NC_006146.1 + 127767 0.78 0.243883
Target:  5'- uCGCcgaccUCAGGGCCAAGGCaCCUGGCgGa -3'
miRNA:   3'- -GCGa----AGUUCUGGUUCCG-GGACCGgCa -5'
29024 3' -57.6 NC_006146.1 + 45405 0.71 0.578449
Target:  5'- aGCacgUCGguGGGCCAgcgcgAGGCCCcGGCCGg -3'
miRNA:   3'- gCGa--AGU--UCUGGU-----UCCGGGaCCGGCa -5'
29024 3' -57.6 NC_006146.1 + 41588 0.7 0.659219
Target:  5'- gGCUggcCGAGGCggaGAGGCCCggggGGCUGg -3'
miRNA:   3'- gCGAa--GUUCUGg--UUCCGGGa---CCGGCa -5'
29024 3' -57.6 NC_006146.1 + 169255 0.69 0.669301
Target:  5'- gGCUcccgagggCGGGGCCGGGGCCUggcgggGGCCa- -3'
miRNA:   3'- gCGAa-------GUUCUGGUUCCGGGa-----CCGGca -5'
29024 3' -57.6 NC_006146.1 + 74717 0.74 0.417889
Target:  5'- aCGC-UCAGGGCCAgaaAGGCCCUGGagGg -3'
miRNA:   3'- -GCGaAGUUCUGGU---UCCGGGACCggCa -5'
29024 3' -57.6 NC_006146.1 + 68915 0.71 0.568449
Target:  5'- gCGCUcaaaauggaCGAGACCGGGGCCUgGGCCc- -3'
miRNA:   3'- -GCGAa--------GUUCUGGUUCCGGGaCCGGca -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.