Results 1 - 20 of 142 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29024 | 3' | -57.6 | NC_006146.1 | + | 150888 | 0.67 | 0.820678 |
Target: 5'- aCGCUggcacacCGGGccGCCGGGGuCCCUccGGCCGg -3' miRNA: 3'- -GCGAa------GUUC--UGGUUCC-GGGA--CCGGCa -5' |
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29024 | 3' | -57.6 | NC_006146.1 | + | 1436 | 0.66 | 0.852401 |
Target: 5'- cCGCcccCGAGGCCcccagggGAGGCCC-GGCCu- -3' miRNA: 3'- -GCGaa-GUUCUGG-------UUCCGGGaCCGGca -5' |
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29024 | 3' | -57.6 | NC_006146.1 | + | 505 | 0.66 | 0.852401 |
Target: 5'- cCGCcccCGAGGCCcccagggGAGGCCC-GGCCu- -3' miRNA: 3'- -GCGaa-GUUCUGG-------UUCCGGGaCCGGca -5' |
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29024 | 3' | -57.6 | NC_006146.1 | + | 40577 | 0.66 | 0.845329 |
Target: 5'- aCGCUgauGAGGuCCu-GGCCCUGGgCGg -3' miRNA: 3'- -GCGAag-UUCU-GGuuCCGGGACCgGCa -5' |
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29024 | 3' | -57.6 | NC_006146.1 | + | 15699 | 0.66 | 0.837292 |
Target: 5'- -cCUUCAuca-CGGGGCCaCUGGCCGa -3' miRNA: 3'- gcGAAGUucugGUUCCGG-GACCGGCa -5' |
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29024 | 3' | -57.6 | NC_006146.1 | + | 125941 | 0.67 | 0.829073 |
Target: 5'- cCGCggUCGAGucccCCGGGGCcuccccgcgccCCUGGCCa- -3' miRNA: 3'- -GCGa-AGUUCu---GGUUCCG-----------GGACCGGca -5' |
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29024 | 3' | -57.6 | NC_006146.1 | + | 49746 | 0.67 | 0.829073 |
Target: 5'- uCGUUUCAGGGgCGcgcGGCCCaGGCCc- -3' miRNA: 3'- -GCGAAGUUCUgGUu--CCGGGaCCGGca -5' |
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29024 | 3' | -57.6 | NC_006146.1 | + | 157044 | 0.67 | 0.820678 |
Target: 5'- aCGCUggcacacCGGGccGCCGGGGuCCCUccGGCCGg -3' miRNA: 3'- -GCGAa------GUUC--UGGUUCC-GGGA--CCGGCa -5' |
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29024 | 3' | -57.6 | NC_006146.1 | + | 153966 | 0.67 | 0.820678 |
Target: 5'- aCGCUggcacacCGGGccGCCGGGGuCCCUccGGCCGg -3' miRNA: 3'- -GCGAa------GUUC--UGGUUCC-GGGA--CCGGCa -5' |
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29024 | 3' | -57.6 | NC_006146.1 | + | 2368 | 0.66 | 0.852401 |
Target: 5'- cCGCcccCGAGGCCcccagggGAGGCCC-GGCCu- -3' miRNA: 3'- -GCGaa-GUUCUGG-------UUCCGGGaCCGGca -5' |
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29024 | 3' | -57.6 | NC_006146.1 | + | 3300 | 0.66 | 0.852401 |
Target: 5'- cCGCcccCGAGGCCcccagggGAGGCCC-GGCCu- -3' miRNA: 3'- -GCGaa-GUUCUGG-------UUCCGGGaCCGGca -5' |
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29024 | 3' | -57.6 | NC_006146.1 | + | 114973 | 0.66 | 0.853177 |
Target: 5'- aCGCagCAgcccacggccgcGGACauCAAGGCCaUGGCCGUg -3' miRNA: 3'- -GCGaaGU------------UCUG--GUUCCGGgACCGGCA- -5' |
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29024 | 3' | -57.6 | NC_006146.1 | + | 20226 | 0.66 | 0.868278 |
Target: 5'- uGCgugCAGGAUUc-GGCCCUGGUCa- -3' miRNA: 3'- gCGaa-GUUCUGGuuCCGGGACCGGca -5' |
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29024 | 3' | -57.6 | NC_006146.1 | + | 14837 | 0.66 | 0.868278 |
Target: 5'- gGUcUCGGGcCCGGGGCCgCgggaGGCCGa -3' miRNA: 3'- gCGaAGUUCuGGUUCCGG-Ga---CCGGCa -5' |
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29024 | 3' | -57.6 | NC_006146.1 | + | 24257 | 0.66 | 0.863833 |
Target: 5'- uGUUUUcuGACCAuGGacccaggccucgugaCCCUGGCCGg -3' miRNA: 3'- gCGAAGuuCUGGUuCC---------------GGGACCGGCa -5' |
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29024 | 3' | -57.6 | NC_006146.1 | + | 136759 | 0.66 | 0.860828 |
Target: 5'- uCGC--CGGGGCUccggGAGGCCC-GGCCGc -3' miRNA: 3'- -GCGaaGUUCUGG----UUCCGGGaCCGGCa -5' |
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29024 | 3' | -57.6 | NC_006146.1 | + | 83710 | 0.66 | 0.860828 |
Target: 5'- uGCUgCAcaGCCuguAGGaCCCUGGCCa- -3' miRNA: 3'- gCGAaGUucUGGu--UCC-GGGACCGGca -5' |
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29024 | 3' | -57.6 | NC_006146.1 | + | 78024 | 0.66 | 0.860828 |
Target: 5'- gGCcuagCAGGuACCuGGGCUCgUGGCCGa -3' miRNA: 3'- gCGaa--GUUC-UGGuUCCGGG-ACCGGCa -5' |
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29024 | 3' | -57.6 | NC_006146.1 | + | 49067 | 0.66 | 0.860828 |
Target: 5'- gGCUggaUCGaaggaGGGCUGAGGCUCcGGCUGUg -3' miRNA: 3'- gCGA---AGU-----UCUGGUUCCGGGaCCGGCA- -5' |
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29024 | 3' | -57.6 | NC_006146.1 | + | 126241 | 0.66 | 0.853177 |
Target: 5'- cCGUUUUggGAcCCAGGcGCCCgGGCUu- -3' miRNA: 3'- -GCGAAGuuCU-GGUUC-CGGGaCCGGca -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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