miRNA display CGI


Results 1 - 20 of 142 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29024 3' -57.6 NC_006146.1 + 170186 0.69 0.669301
Target:  5'- gGCUcccgagggCGGGGCCGGGGCCUggcgggGGCCa- -3'
miRNA:   3'- gCGAa-------GUUCUGGUUCCGGGa-----CCGGca -5'
29024 3' -57.6 NC_006146.1 + 169255 0.69 0.669301
Target:  5'- gGCUcccgagggCGGGGCCGGGGCCUggcgggGGCCa- -3'
miRNA:   3'- gCGAa-------GUUCUGGUUCCGGGa-----CCGGca -5'
29024 3' -57.6 NC_006146.1 + 168323 0.69 0.669301
Target:  5'- gGCUcccgagggCGGGGCCGGGGCCUggcgggGGCCa- -3'
miRNA:   3'- gCGAa-------GUUCUGGUUCCGGGa-----CCGGca -5'
29024 3' -57.6 NC_006146.1 + 167517 0.74 0.400777
Target:  5'- aCGCUUCAGGGCCuguAGGaCgCCgcGGCCGUu -3'
miRNA:   3'- -GCGAAGUUCUGGu--UCC-G-GGa-CCGGCA- -5'
29024 3' -57.6 NC_006146.1 + 167391 0.69 0.669301
Target:  5'- gGCUcccgagggCGGGGCCGGGGCCUggcgggGGCCa- -3'
miRNA:   3'- gCGAa-------GUUCUGGUUCCGGGa-----CCGGca -5'
29024 3' -57.6 NC_006146.1 + 159896 0.71 0.568449
Target:  5'- gGCcUCGAGGCCGGGGCCCUcgaagauggggGGCa-- -3'
miRNA:   3'- gCGaAGUUCUGGUUCCGGGA-----------CCGgca -5'
29024 3' -57.6 NC_006146.1 + 158812 0.67 0.829073
Target:  5'- aGCguguUCAGGcacacgGCCGGGGCCC-GGCCc- -3'
miRNA:   3'- gCGa---AGUUC------UGGUUCCGGGaCCGGca -5'
29024 3' -57.6 NC_006146.1 + 157275 0.71 0.568449
Target:  5'- uGCUg-GGGACCAGGGCcuCCUGGgCGUc -3'
miRNA:   3'- gCGAagUUCUGGUUCCG--GGACCgGCA- -5'
29024 3' -57.6 NC_006146.1 + 157044 0.67 0.820678
Target:  5'- aCGCUggcacacCGGGccGCCGGGGuCCCUccGGCCGg -3'
miRNA:   3'- -GCGAa------GUUC--UGGUUCC-GGGA--CCGGCa -5'
29024 3' -57.6 NC_006146.1 + 155867 0.69 0.679354
Target:  5'- gGCc-CGAGACCuggGGGCCCgGGCCu- -3'
miRNA:   3'- gCGaaGUUCUGGu--UCCGGGaCCGGca -5'
29024 3' -57.6 NC_006146.1 + 155853 0.7 0.638998
Target:  5'- uGCcuccucgCAGGcCCGgcGGGCCCUGGCCa- -3'
miRNA:   3'- gCGaa-----GUUCuGGU--UCCGGGACCGGca -5'
29024 3' -57.6 NC_006146.1 + 155150 0.66 0.868278
Target:  5'- uCGCagCAgcGGGCCAGGGCCacguugCUGGgCGg -3'
miRNA:   3'- -GCGaaGU--UCUGGUUCCGG------GACCgGCa -5'
29024 3' -57.6 NC_006146.1 + 154197 0.71 0.568449
Target:  5'- uGCUg-GGGACCAGGGCcuCCUGGgCGUc -3'
miRNA:   3'- gCGAagUUCUGGUUCCG--GGACCgGCA- -5'
29024 3' -57.6 NC_006146.1 + 153966 0.67 0.820678
Target:  5'- aCGCUggcacacCGGGccGCCGGGGuCCCUccGGCCGg -3'
miRNA:   3'- -GCGAa------GUUC--UGGUUCC-GGGA--CCGGCa -5'
29024 3' -57.6 NC_006146.1 + 153300 0.7 0.618756
Target:  5'- uGCUcCAGGcACC-AGGCCCgGGCCa- -3'
miRNA:   3'- gCGAaGUUC-UGGuUCCGGGaCCGGca -5'
29024 3' -57.6 NC_006146.1 + 152789 0.69 0.679354
Target:  5'- gGCc-CGAGACCuggGGGCCCgGGCCu- -3'
miRNA:   3'- gCGaaGUUCUGGu--UCCGGGaCCGGca -5'
29024 3' -57.6 NC_006146.1 + 151119 0.71 0.568449
Target:  5'- uGCUg-GGGACCAGGGCcuCCUGGgCGUc -3'
miRNA:   3'- gCGAagUUCUGGUUCCG--GGACCgGCA- -5'
29024 3' -57.6 NC_006146.1 + 150888 0.67 0.820678
Target:  5'- aCGCUggcacacCGGGccGCCGGGGuCCCUccGGCCGg -3'
miRNA:   3'- -GCGAa------GUUC--UGGUUCC-GGGA--CCGGCa -5'
29024 3' -57.6 NC_006146.1 + 149997 0.69 0.679354
Target:  5'- gGCcggacUCAGGGCCuccacgAAGGCCUUGGCCc- -3'
miRNA:   3'- gCGa----AGUUCUGG------UUCCGGGACCGGca -5'
29024 3' -57.6 NC_006146.1 + 149711 0.69 0.679354
Target:  5'- gGCc-CGAGACCuggGGGCCCgGGCCu- -3'
miRNA:   3'- gCGaaGUUCUGGu--UCCGGGaCCGGca -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.