miRNA display CGI


Results 41 - 60 of 142 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29024 3' -57.6 NC_006146.1 + 41331 0.68 0.780027
Target:  5'- uGUUUCGcgccccaaccuaucuGGcCCAGGGCCUggcgguggUGGCCGUg -3'
miRNA:   3'- gCGAAGU---------------UCuGGUUCCGGG--------ACCGGCA- -5'
29024 3' -57.6 NC_006146.1 + 168323 0.69 0.669301
Target:  5'- gGCUcccgagggCGGGGCCGGGGCCUggcgggGGCCa- -3'
miRNA:   3'- gCGAa-------GUUCUGGUUCCGGGa-----CCGGca -5'
29024 3' -57.6 NC_006146.1 + 127767 0.78 0.243883
Target:  5'- uCGCcgaccUCAGGGCCAAGGCaCCUGGCgGa -3'
miRNA:   3'- -GCGa----AGUUCUGGUUCCG-GGACCGgCa -5'
29024 3' -57.6 NC_006146.1 + 56304 0.68 0.776351
Target:  5'- cCGCcUCGAGGu---GGCCCaGGCCGUa -3'
miRNA:   3'- -GCGaAGUUCUgguuCCGGGaCCGGCA- -5'
29024 3' -57.6 NC_006146.1 + 46118 0.8 0.196064
Target:  5'- aGCagCAGGcauGCCcGGGCCCUGGCCGUg -3'
miRNA:   3'- gCGaaGUUC---UGGuUCCGGGACCGGCA- -5'
29024 3' -57.6 NC_006146.1 + 79805 0.66 0.850843
Target:  5'- gGCgUCGAGuuGCCAuGGCUuccuccauuugugaCUGGCCGUa -3'
miRNA:   3'- gCGaAGUUC--UGGUuCCGG--------------GACCGGCA- -5'
29024 3' -57.6 NC_006146.1 + 55041 0.74 0.42661
Target:  5'- gGggUCGGGGCCGGGGCCUgccacaggcGGCCGUa -3'
miRNA:   3'- gCgaAGUUCUGGUUCCGGGa--------CCGGCA- -5'
29024 3' -57.6 NC_006146.1 + 50718 0.67 0.829073
Target:  5'- cCGggUCAuAGACgAGGGCCC-GGUCGg -3'
miRNA:   3'- -GCgaAGU-UCUGgUUCCGGGaCCGGCa -5'
29024 3' -57.6 NC_006146.1 + 28124 0.67 0.829073
Target:  5'- aGCaagCGAGACCAgcccagAGGCCCgagguugGaGCCGg -3'
miRNA:   3'- gCGaa-GUUCUGGU------UCCGGGa------C-CGGCa -5'
29024 3' -57.6 NC_006146.1 + 12734 0.67 0.829073
Target:  5'- aGCaagCGAGACCAgcccagAGGCCCgagguugGaGCCGg -3'
miRNA:   3'- gCGaa-GUUCUGGU------UCCGGGa------C-CGGCa -5'
29024 3' -57.6 NC_006146.1 + 57901 0.67 0.811251
Target:  5'- uCGCcUCAAGGCCGA-GUCCgucacgcgcacggUGGCCGa -3'
miRNA:   3'- -GCGaAGUUCUGGUUcCGGG-------------ACCGGCa -5'
29024 3' -57.6 NC_006146.1 + 18612 0.67 0.803394
Target:  5'- gGCgcCGGGGCCuuucAGGCCCUcgGGCCc- -3'
miRNA:   3'- gCGaaGUUCUGGu---UCCGGGA--CCGGca -5'
29024 3' -57.6 NC_006146.1 + 55907 0.67 0.803394
Target:  5'- aGCUcCAcGGCCAuGGCCUUgauguccgcGGCCGUg -3'
miRNA:   3'- gCGAaGUuCUGGUuCCGGGA---------CCGGCA- -5'
29024 3' -57.6 NC_006146.1 + 52993 0.68 0.748173
Target:  5'- gCGUcUCGAGGCCccucuucuGGCCCUgGGCCu- -3'
miRNA:   3'- -GCGaAGUUCUGGuu------CCGGGA-CCGGca -5'
29024 3' -57.6 NC_006146.1 + 87184 0.68 0.728875
Target:  5'- uGUUUUu-GGCCAGGGUCCUacaGGCUGUg -3'
miRNA:   3'- gCGAAGuuCUGGUUCCGGGA---CCGGCA- -5'
29024 3' -57.6 NC_006146.1 + 69870 0.69 0.689368
Target:  5'- gGCguaGAGGCCcAGGUCCacGGCCGUg -3'
miRNA:   3'- gCGaagUUCUGGuUCCGGGa-CCGGCA- -5'
29024 3' -57.6 NC_006146.1 + 170186 0.69 0.669301
Target:  5'- gGCUcccgagggCGGGGCCGGGGCCUggcgggGGCCa- -3'
miRNA:   3'- gCGAa-------GUUCUGGUUCCGGGa-----CCGGca -5'
29024 3' -57.6 NC_006146.1 + 155853 0.7 0.638998
Target:  5'- uGCcuccucgCAGGcCCGgcGGGCCCUGGCCa- -3'
miRNA:   3'- gCGaa-----GUUCuGGU--UCCGGGACCGGca -5'
29024 3' -57.6 NC_006146.1 + 109276 0.71 0.612689
Target:  5'- uGCUUCAggucguagcugggagGGAUCucGGCCCcGGCCGc -3'
miRNA:   3'- gCGAAGU---------------UCUGGuuCCGGGaCCGGCa -5'
29024 3' -57.6 NC_006146.1 + 47198 0.71 0.568449
Target:  5'- cCGCccCGAGcGCCAGGcCCCUGGCCGc -3'
miRNA:   3'- -GCGaaGUUC-UGGUUCcGGGACCGGCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.