miRNA display CGI


Results 21 - 40 of 340 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29028 3' -53.8 NC_006146.1 + 101982 0.73 0.656106
Target:  5'- uGGCUAGAGGCUcuggcucccuugcuAGGGGCUCUGgGCUg -3'
miRNA:   3'- cUCGGUCUUCGA--------------UUUUCGGGACgCGG- -5'
29028 3' -53.8 NC_006146.1 + 168306 0.73 0.627833
Target:  5'- cGGCCGGggGCUGAGGGggcuCCCgagggcgGgGCCg -3'
miRNA:   3'- cUCGGUCuuCGAUUUUC----GGGa------CgCGG- -5'
29028 3' -53.8 NC_006146.1 + 34562 0.75 0.56532
Target:  5'- --aCCAGGAGggGGAGGUUCUGCGCCc -3'
miRNA:   3'- cucGGUCUUCgaUUUUCGGGACGCGG- -5'
29028 3' -53.8 NC_006146.1 + 39043 0.77 0.446754
Target:  5'- gGGGCCAGcAGGC-AGGGGCCCUGUgaauggucGCCg -3'
miRNA:   3'- -CUCGGUC-UUCGaUUUUCGGGACG--------CGG- -5'
29028 3' -53.8 NC_006146.1 + 15465 0.72 0.731288
Target:  5'- aGAGUCAcGGGCUAcAGGCCCUGC-CUc -3'
miRNA:   3'- -CUCGGUcUUCGAUuUUCGGGACGcGG- -5'
29028 3' -53.8 NC_006146.1 + 12919 0.72 0.721187
Target:  5'- uGAGCCuGguGCcucUGGAGGCCCUG-GCCc -3'
miRNA:   3'- -CUCGGuCuuCG---AUUUUCGGGACgCGG- -5'
29028 3' -53.8 NC_006146.1 + 138389 0.73 0.627833
Target:  5'- uGAGCCAGGAGg-GGGAGaaauUCUGCGCCc -3'
miRNA:   3'- -CUCGGUCUUCgaUUUUCg---GGACGCGG- -5'
29028 3' -53.8 NC_006146.1 + 151315 0.8 0.298487
Target:  5'- aGGGCCAGGAGCU----GUCCUcGCGCCg -3'
miRNA:   3'- -CUCGGUCUUCGAuuuuCGGGA-CGCGG- -5'
29028 3' -53.8 NC_006146.1 + 107541 0.72 0.700755
Target:  5'- uGAGCCccAGGAG-----GGCCCUGUGCCc -3'
miRNA:   3'- -CUCGG--UCUUCgauuuUCGGGACGCGG- -5'
29028 3' -53.8 NC_006146.1 + 146535 0.82 0.245937
Target:  5'- -cGCCcuGGAGCU---GGCCCUGCGCCa -3'
miRNA:   3'- cuCGGu-CUUCGAuuuUCGGGACGCGG- -5'
29028 3' -53.8 NC_006146.1 + 167374 0.73 0.627833
Target:  5'- cGGCCGGggGCUGAGGGggcuCCCgagggcgGgGCCg -3'
miRNA:   3'- cUCGGUCuuCGAUUUUC----GGGa------CgCGG- -5'
29028 3' -53.8 NC_006146.1 + 45680 0.73 0.669677
Target:  5'- -cGCCAGgGAGCggAAGGGCUCUgaGCGCCc -3'
miRNA:   3'- cuCGGUC-UUCGa-UUUUCGGGA--CGCGG- -5'
29028 3' -53.8 NC_006146.1 + 169559 0.74 0.575659
Target:  5'- cGAGCgGGggGCUuccccGGGGCCCgaGCGCg -3'
miRNA:   3'- -CUCGgUCuuCGAu----UUUCGGGa-CGCGg -5'
29028 3' -53.8 NC_006146.1 + 131120 0.75 0.56532
Target:  5'- aAGCCGGGAGCUccGGGCCCaa-GCCu -3'
miRNA:   3'- cUCGGUCUUCGAuuUUCGGGacgCGG- -5'
29028 3' -53.8 NC_006146.1 + 99435 0.75 0.524522
Target:  5'- aGAuCCAGGAGCauGAGGCCCUcgcuccucgGCGCCa -3'
miRNA:   3'- -CUcGGUCUUCGauUUUCGGGA---------CGCGG- -5'
29028 3' -53.8 NC_006146.1 + 42690 0.77 0.446754
Target:  5'- -uGCCuGAGGCUGgcAGAGCCCcccaGCGCCc -3'
miRNA:   3'- cuCGGuCUUCGAU--UUUCGGGa---CGCGG- -5'
29028 3' -53.8 NC_006146.1 + 27777 0.72 0.731288
Target:  5'- aGAGUCAcGGGCUAcAGGCCCUGC-CUc -3'
miRNA:   3'- -CUCGGUcUUCGAUuUUCGGGACGcGG- -5'
29028 3' -53.8 NC_006146.1 + 18543 0.72 0.731288
Target:  5'- aGAGUCAcGGGCUAcAGGCCCUGC-CUc -3'
miRNA:   3'- -CUCGGUcUUCGAUuUUCGGGACGcGG- -5'
29028 3' -53.8 NC_006146.1 + 25230 0.72 0.721187
Target:  5'- uGAGCCuGguGCcucUGGAGGCCCUG-GCCc -3'
miRNA:   3'- -CUCGGuCuuCG---AUUUUCGGGACgCGG- -5'
29028 3' -53.8 NC_006146.1 + 15996 0.72 0.721187
Target:  5'- uGAGCCuGguGCcucUGGAGGCCCUG-GCCc -3'
miRNA:   3'- -CUCGGuCuuCG---AUUUUCGGGACgCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.