miRNA display CGI


Results 1 - 20 of 340 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29028 3' -53.8 NC_006146.1 + 62201 1.13 0.002493
Target:  5'- gGAGCCAGAAGCUAAAAGCCCUGCGCCg -3'
miRNA:   3'- -CUCGGUCUUCGAUUUUCGGGACGCGG- -5'
29028 3' -53.8 NC_006146.1 + 138389 0.73 0.627833
Target:  5'- uGAGCCAGGAGg-GGGAGaaauUCUGCGCCc -3'
miRNA:   3'- -CUCGGUCUUCgaUUUUCg---GGACGCGG- -5'
29028 3' -53.8 NC_006146.1 + 168306 0.73 0.627833
Target:  5'- cGGCCGGggGCUGAGGGggcuCCCgagggcgGgGCCg -3'
miRNA:   3'- cUCGGUCuuCGAUUUUC----GGGa------CgCGG- -5'
29028 3' -53.8 NC_006146.1 + 33398 0.65 0.965063
Target:  5'- cGGGUgGGggGU----GGCCCgccugggcaccgcUGCGCCg -3'
miRNA:   3'- -CUCGgUCuuCGauuuUCGGG-------------ACGCGG- -5'
29028 3' -53.8 NC_006146.1 + 42690 0.77 0.446754
Target:  5'- -uGCCuGAGGCUGgcAGAGCCCcccaGCGCCc -3'
miRNA:   3'- cuCGGuCUUCGAU--UUUCGGGa---CGCGG- -5'
29028 3' -53.8 NC_006146.1 + 21930 0.76 0.494673
Target:  5'- cGAGCagagaGGAAG-UAGAGGCCC-GCGCCa -3'
miRNA:   3'- -CUCGg----UCUUCgAUUUUCGGGaCGCGG- -5'
29028 3' -53.8 NC_006146.1 + 99435 0.75 0.524522
Target:  5'- aGAuCCAGGAGCauGAGGCCCUcgcuccucgGCGCCa -3'
miRNA:   3'- -CUcGGUCUUCGauUUUCGGGA---------CGCGG- -5'
29028 3' -53.8 NC_006146.1 + 44638 0.75 0.524522
Target:  5'- gGAGCUggAGAGGCgucucccAAGCCCggGCGCCu -3'
miRNA:   3'- -CUCGG--UCUUCGauu----UUCGGGa-CGCGG- -5'
29028 3' -53.8 NC_006146.1 + 131120 0.75 0.56532
Target:  5'- aAGCCGGGAGCUccGGGCCCaa-GCCu -3'
miRNA:   3'- cUCGGUCUUCGAuuUUCGGGacgCGG- -5'
29028 3' -53.8 NC_006146.1 + 146762 0.74 0.621547
Target:  5'- -cGCCAGAGGCcgAGucacgcgacagguacAGGCCCgGUGCCa -3'
miRNA:   3'- cuCGGUCUUCGa-UU---------------UUCGGGaCGCGG- -5'
29028 3' -53.8 NC_006146.1 + 168627 0.74 0.575659
Target:  5'- cGAGCgGGggGCUuccccGGGGCCCgaGCGCg -3'
miRNA:   3'- -CUCGgUCuuCGAu----UUUCGGGa-CGCGg -5'
29028 3' -53.8 NC_006146.1 + 34562 0.75 0.56532
Target:  5'- --aCCAGGAGggGGAGGUUCUGCGCCc -3'
miRNA:   3'- cucGGUCUUCgaUUUUCGGGACGCGG- -5'
29028 3' -53.8 NC_006146.1 + 146535 0.82 0.245937
Target:  5'- -cGCCcuGGAGCU---GGCCCUGCGCCa -3'
miRNA:   3'- cuCGGu-CUUCGAuuuUCGGGACGCGG- -5'
29028 3' -53.8 NC_006146.1 + 169559 0.74 0.575659
Target:  5'- cGAGCgGGggGCUuccccGGGGCCCgaGCGCg -3'
miRNA:   3'- -CUCGgUCuuCGAu----UUUCGGGa-CGCGg -5'
29028 3' -53.8 NC_006146.1 + 151315 0.8 0.298487
Target:  5'- aGGGCCAGGAGCU----GUCCUcGCGCCg -3'
miRNA:   3'- -CUCGGUCUUCGAuuuuCGGGA-CGCGG- -5'
29028 3' -53.8 NC_006146.1 + 115595 0.75 0.524522
Target:  5'- cGGCCGGGAagacGCUGaaGAAGUCCUGCGUg -3'
miRNA:   3'- cUCGGUCUU----CGAU--UUUCGGGACGCGg -5'
29028 3' -53.8 NC_006146.1 + 150195 0.74 0.586039
Target:  5'- -cGCCAGcAGCUucuuaauGGCCUUGCGCUu -3'
miRNA:   3'- cuCGGUCuUCGAuuu----UCGGGACGCGG- -5'
29028 3' -53.8 NC_006146.1 + 167374 0.73 0.627833
Target:  5'- cGGCCGGggGCUGAGGGggcuCCCgagggcgGgGCCg -3'
miRNA:   3'- cUCGGUCuuCGAUUUUC----GGGa------CgCGG- -5'
29028 3' -53.8 NC_006146.1 + 39043 0.77 0.446754
Target:  5'- gGGGCCAGcAGGC-AGGGGCCCUGUgaauggucGCCg -3'
miRNA:   3'- -CUCGGUC-UUCGaUUUUCGGGACG--------CGG- -5'
29028 3' -53.8 NC_006146.1 + 128788 0.76 0.514492
Target:  5'- -uGCCAGAGGCccucguAGUCgUGCGCCg -3'
miRNA:   3'- cuCGGUCUUCGauuu--UCGGgACGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.