Results 1 - 20 of 340 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29028 | 3' | -53.8 | NC_006146.1 | + | 167808 | 0.65 | 0.964391 |
Target: 5'- aGGCCGGAgaagAGCUccAGAGCggucuggacgguagCCUGgGCCa -3' miRNA: 3'- cUCGGUCU----UCGAu-UUUCG--------------GGACgCGG- -5' |
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29028 | 3' | -53.8 | NC_006146.1 | + | 33276 | 0.65 | 0.965063 |
Target: 5'- cGGGUgGGggGU----GGCCCggcugggcaccgcUGCGCCg -3' miRNA: 3'- -CUCGgUCuuCGauuuUCGGG-------------ACGCGG- -5' |
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29028 | 3' | -53.8 | NC_006146.1 | + | 33398 | 0.65 | 0.965063 |
Target: 5'- cGGGUgGGggGU----GGCCCgccugggcaccgcUGCGCCg -3' miRNA: 3'- -CUCGgUCuuCGauuuUCGGG-------------ACGCGG- -5' |
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29028 | 3' | -53.8 | NC_006146.1 | + | 39757 | 0.66 | 0.958311 |
Target: 5'- cGGCUGGAGGCUGGGgcuuggagucAGgCUUGgGCCc -3' miRNA: 3'- cUCGGUCUUCGAUUU----------UCgGGACgCGG- -5' |
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29028 | 3' | -53.8 | NC_006146.1 | + | 165791 | 0.66 | 0.958311 |
Target: 5'- aGAGCCAcGGuggcacggccGGCUAGGGGggcguCCCUG-GCCg -3' miRNA: 3'- -CUCGGU-CU----------UCGAUUUUC-----GGGACgCGG- -5' |
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29028 | 3' | -53.8 | NC_006146.1 | + | 43270 | 0.66 | 0.958311 |
Target: 5'- aGGCaCAGGgcGGcCUGGAGGUCCggcagGUGCCu -3' miRNA: 3'- cUCG-GUCU--UC-GAUUUUCGGGa----CGCGG- -5' |
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29028 | 3' | -53.8 | NC_006146.1 | + | 27099 | 0.66 | 0.957933 |
Target: 5'- uGAGCCGGugaccgGGGAGCCCUgguuagcauucuaGCGUCg -3' miRNA: 3'- -CUCGGUCuucga-UUUUCGGGA-------------CGCGG- -5' |
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29028 | 3' | -53.8 | NC_006146.1 | + | 13259 | 0.66 | 0.957552 |
Target: 5'- uGGuCCAGggGCUGGu-GCCCaagacccaggcgGUGCCc -3' miRNA: 3'- cUC-GGUCuuCGAUUuuCGGGa-----------CGCGG- -5' |
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29028 | 3' | -53.8 | NC_006146.1 | + | 117257 | 0.66 | 0.95442 |
Target: 5'- -uGUCGGgcGCUGAcuGAGCCCcGCGauCCu -3' miRNA: 3'- cuCGGUCuuCGAUU--UUCGGGaCGC--GG- -5' |
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29028 | 3' | -53.8 | NC_006146.1 | + | 161743 | 0.66 | 0.95442 |
Target: 5'- uAGcCCGGggGUggcggcuGAGGUCCgaggggGCGCCu -3' miRNA: 3'- cUC-GGUCuuCGau-----UUUCGGGa-----CGCGG- -5' |
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29028 | 3' | -53.8 | NC_006146.1 | + | 131590 | 0.66 | 0.958311 |
Target: 5'- aGGCCAGccGAGCccaguacacAGGCCuCUGCuGCCa -3' miRNA: 3'- cUCGGUC--UUCGauu------UUCGG-GACG-CGG- -5' |
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29028 | 3' | -53.8 | NC_006146.1 | + | 142129 | 0.66 | 0.958311 |
Target: 5'- -cGuCCucuGGaCUAGGGGCCCUGgGCCc -3' miRNA: 3'- cuC-GGucuUC-GAUUUUCGGGACgCGG- -5' |
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29028 | 3' | -53.8 | NC_006146.1 | + | 145207 | 0.66 | 0.958311 |
Target: 5'- -cGuCCucuGGaCUAGGGGCCCUGgGCCc -3' miRNA: 3'- cuC-GGucuUC-GAUUUUCGGGACgCGG- -5' |
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29028 | 3' | -53.8 | NC_006146.1 | + | 148285 | 0.66 | 0.958311 |
Target: 5'- -cGuCCucuGGaCUAGGGGCCCUGgGCCc -3' miRNA: 3'- cuC-GGucuUC-GAUUUUCGGGACgCGG- -5' |
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29028 | 3' | -53.8 | NC_006146.1 | + | 151363 | 0.66 | 0.958311 |
Target: 5'- -cGuCCucuGGaCUAGGGGCCCUGgGCCc -3' miRNA: 3'- cuC-GGucuUC-GAUUUUCGGGACgCGG- -5' |
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29028 | 3' | -53.8 | NC_006146.1 | + | 154441 | 0.66 | 0.958311 |
Target: 5'- -cGuCCucuGGaCUAGGGGCCCUGgGCCc -3' miRNA: 3'- cuC-GGucuUC-GAUUUUCGGGACgCGG- -5' |
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29028 | 3' | -53.8 | NC_006146.1 | + | 157519 | 0.66 | 0.958311 |
Target: 5'- -cGuCCucuGGaCUAGGGGCCCUGgGCCc -3' miRNA: 3'- cuC-GGucuUC-GAUUUUCGGGACgCGG- -5' |
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29028 | 3' | -53.8 | NC_006146.1 | + | 123096 | 0.66 | 0.959802 |
Target: 5'- cGAGCCcaugagacggcgguGGgcGCUAGAcggggcuuucagacGGCCCUGgagGCCg -3' miRNA: 3'- -CUCGG--------------UCuuCGAUUU--------------UCGGGACg--CGG- -5' |
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29028 | 3' | -53.8 | NC_006146.1 | + | 109401 | 0.66 | 0.961612 |
Target: 5'- aGGGCggCAGggGCcuccucGGAGCCCUGgugauccUGCCa -3' miRNA: 3'- -CUCG--GUCuuCGau----UUUCGGGAC-------GCGG- -5' |
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29028 | 3' | -53.8 | NC_006146.1 | + | 25178 | 0.66 | 0.961968 |
Target: 5'- cGGCCAGAgcgacaucaAGCUGAcgcGCuCCUGCuCCc -3' miRNA: 3'- cUCGGUCU---------UCGAUUuu-CG-GGACGcGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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