miRNA display CGI


Results 1 - 20 of 340 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29028 3' -53.8 NC_006146.1 + 62201 1.13 0.002493
Target:  5'- gGAGCCAGAAGCUAAAAGCCCUGCGCCg -3'
miRNA:   3'- -CUCGGUCUUCGAUUUUCGGGACGCGG- -5'
29028 3' -53.8 NC_006146.1 + 1516 0.85 0.159652
Target:  5'- gGGGCCGGggGCgc--GGCCCgGCGCCa -3'
miRNA:   3'- -CUCGGUCuuCGauuuUCGGGaCGCGG- -5'
29028 3' -53.8 NC_006146.1 + 585 0.85 0.159652
Target:  5'- gGGGCCGGggGCgc--GGCCCgGCGCCa -3'
miRNA:   3'- -CUCGGUCuuCGauuuUCGGGaCGCGG- -5'
29028 3' -53.8 NC_006146.1 + 2448 0.85 0.159652
Target:  5'- gGGGCCGGggGCgc--GGCCCgGCGCCa -3'
miRNA:   3'- -CUCGGUCuuCGauuuUCGGGaCGCGG- -5'
29028 3' -53.8 NC_006146.1 + 3380 0.85 0.159652
Target:  5'- gGGGCCGGggGCgc--GGCCCgGCGCCa -3'
miRNA:   3'- -CUCGGUCuuCGauuuUCGGGaCGCGG- -5'
29028 3' -53.8 NC_006146.1 + 146535 0.82 0.245937
Target:  5'- -cGCCcuGGAGCU---GGCCCUGCGCCa -3'
miRNA:   3'- cuCGGu-CUUCGAuuuUCGGGACGCGG- -5'
29028 3' -53.8 NC_006146.1 + 115364 0.82 0.245937
Target:  5'- uGGCCGGcguggcggcgGAGCUGGAGGCCCUG-GCCg -3'
miRNA:   3'- cUCGGUC----------UUCGAUUUUCGGGACgCGG- -5'
29028 3' -53.8 NC_006146.1 + 151315 0.8 0.298487
Target:  5'- aGGGCCAGGAGCU----GUCCUcGCGCCg -3'
miRNA:   3'- -CUCGGUCUUCGAuuuuCGGGA-CGCGG- -5'
29028 3' -53.8 NC_006146.1 + 41746 0.78 0.366692
Target:  5'- cGGGCCcugAGAcgggugGGCUucccgccGGAGGCCCUGCGCCc -3'
miRNA:   3'- -CUCGG---UCU------UCGA-------UUUUCGGGACGCGG- -5'
29028 3' -53.8 NC_006146.1 + 42690 0.77 0.446754
Target:  5'- -uGCCuGAGGCUGgcAGAGCCCcccaGCGCCc -3'
miRNA:   3'- cuCGGuCUUCGAU--UUUCGGGa---CGCGG- -5'
29028 3' -53.8 NC_006146.1 + 39043 0.77 0.446754
Target:  5'- gGGGCCAGcAGGC-AGGGGCCCUGUgaauggucGCCg -3'
miRNA:   3'- -CUCGGUC-UUCGaUUUUCGGGACG--------CGG- -5'
29028 3' -53.8 NC_006146.1 + 14158 0.76 0.465621
Target:  5'- uGGCCGuGGAGCU--GAGCgUCUGCGCCa -3'
miRNA:   3'- cUCGGU-CUUCGAuuUUCG-GGACGCGG- -5'
29028 3' -53.8 NC_006146.1 + 15310 0.76 0.475209
Target:  5'- gGGGCCGGAGGCc---AGCCCcggUGUGCCc -3'
miRNA:   3'- -CUCGGUCUUCGauuuUCGGG---ACGCGG- -5'
29028 3' -53.8 NC_006146.1 + 21930 0.76 0.494673
Target:  5'- cGAGCagagaGGAAG-UAGAGGCCC-GCGCCa -3'
miRNA:   3'- -CUCGg----UCUUCgAUUUUCGGGaCGCGG- -5'
29028 3' -53.8 NC_006146.1 + 128788 0.76 0.514492
Target:  5'- -uGCCAGAGGCccucguAGUCgUGCGCCg -3'
miRNA:   3'- cuCGGUCUUCGauuu--UCGGgACGCGG- -5'
29028 3' -53.8 NC_006146.1 + 44638 0.75 0.524522
Target:  5'- gGAGCUggAGAGGCgucucccAAGCCCggGCGCCu -3'
miRNA:   3'- -CUCGG--UCUUCGauu----UUCGGGa-CGCGG- -5'
29028 3' -53.8 NC_006146.1 + 115595 0.75 0.524522
Target:  5'- cGGCCGGGAagacGCUGaaGAAGUCCUGCGUg -3'
miRNA:   3'- cUCGGUCUU----CGAU--UUUCGGGACGCGg -5'
29028 3' -53.8 NC_006146.1 + 99435 0.75 0.524522
Target:  5'- aGAuCCAGGAGCauGAGGCCCUcgcuccucgGCGCCa -3'
miRNA:   3'- -CUcGGUCUUCGauUUUCGGGA---------CGCGG- -5'
29028 3' -53.8 NC_006146.1 + 71217 0.75 0.534625
Target:  5'- -cGCCGGggGCUucGAGUCCUG-GCUg -3'
miRNA:   3'- cuCGGUCuuCGAuuUUCGGGACgCGG- -5'
29028 3' -53.8 NC_006146.1 + 57219 0.75 0.56532
Target:  5'- cGGGCCGGAGGCc--GGGCCC-GgGCCc -3'
miRNA:   3'- -CUCGGUCUUCGauuUUCGGGaCgCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.