miRNA display CGI


Results 1 - 20 of 340 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29028 3' -53.8 NC_006146.1 + 282 0.68 0.888557
Target:  5'- gGAGCCcgggaagacccGGggGCg---GGCCCgGCGCg -3'
miRNA:   3'- -CUCGG-----------UCuuCGauuuUCGGGaCGCGg -5'
29028 3' -53.8 NC_006146.1 + 585 0.85 0.159652
Target:  5'- gGGGCCGGggGCgc--GGCCCgGCGCCa -3'
miRNA:   3'- -CUCGGUCuuCGauuuUCGGGaCGCGG- -5'
29028 3' -53.8 NC_006146.1 + 881 0.67 0.920346
Target:  5'- uGGCCgcGGGAGCagacggggGAAGGCCgC-GCGCCg -3'
miRNA:   3'- cUCGG--UCUUCGa-------UUUUCGG-GaCGCGG- -5'
29028 3' -53.8 NC_006146.1 + 1516 0.85 0.159652
Target:  5'- gGGGCCGGggGCgc--GGCCCgGCGCCa -3'
miRNA:   3'- -CUCGGUCuuCGauuuUCGGGaCGCGG- -5'
29028 3' -53.8 NC_006146.1 + 1813 0.67 0.920346
Target:  5'- uGGCCgcGGGAGCagacggggGAAGGCCgC-GCGCCg -3'
miRNA:   3'- cUCGG--UCUUCGa-------UUUUCGG-GaCGCGG- -5'
29028 3' -53.8 NC_006146.1 + 2370 0.67 0.935939
Target:  5'- cGAGCCGGGacaggcguccgcgGGCUuccaGAGGGCUCUGUugguccccgGCCc -3'
miRNA:   3'- -CUCGGUCU-------------UCGA----UUUUCGGGACG---------CGG- -5'
29028 3' -53.8 NC_006146.1 + 2448 0.85 0.159652
Target:  5'- gGGGCCGGggGCgc--GGCCCgGCGCCa -3'
miRNA:   3'- -CUCGGUCuuCGauuuUCGGGaCGCGG- -5'
29028 3' -53.8 NC_006146.1 + 2745 0.67 0.920346
Target:  5'- uGGCCgcGGGAGCagacggggGAAGGCCgC-GCGCCg -3'
miRNA:   3'- cUCGG--UCUUCGa-------UUUUCGG-GaCGCGG- -5'
29028 3' -53.8 NC_006146.1 + 3139 0.68 0.914482
Target:  5'- cGAGCCAugcGCgcccacccGGcCCCUGCGCCc -3'
miRNA:   3'- -CUCGGUcuuCGauuu----UC-GGGACGCGG- -5'
29028 3' -53.8 NC_006146.1 + 3380 0.85 0.159652
Target:  5'- gGGGCCGGggGCgc--GGCCCgGCGCCa -3'
miRNA:   3'- -CUCGGUCuuCGauuuUCGGGaCGCGG- -5'
29028 3' -53.8 NC_006146.1 + 3677 0.67 0.920346
Target:  5'- uGGCCgcGGGAGCagacggggGAAGGCCgC-GCGCCg -3'
miRNA:   3'- cUCGG--UCUUCGa-------UUUUCGG-GaCGCGG- -5'
29028 3' -53.8 NC_006146.1 + 4915 0.7 0.820493
Target:  5'- aGAGCCGGAcccucgcugucggguGGCcgu--GCUCUGUGCCc -3'
miRNA:   3'- -CUCGGUCU---------------UCGauuuuCGGGACGCGG- -5'
29028 3' -53.8 NC_006146.1 + 4957 0.69 0.866618
Target:  5'- gGGGaCCAGggGCcacGAGAGCCUccugGCgGCCu -3'
miRNA:   3'- -CUC-GGUCuuCGa--UUUUCGGGa---CG-CGG- -5'
29028 3' -53.8 NC_006146.1 + 5214 0.68 0.881475
Target:  5'- gGAGCUAGggGUgc-AGGUCCU-UGCCg -3'
miRNA:   3'- -CUCGGUCuuCGauuUUCGGGAcGCGG- -5'
29028 3' -53.8 NC_006146.1 + 6407 0.67 0.941303
Target:  5'- uGGGCCAuGggGUcccuuuGGCCCaGgGCCa -3'
miRNA:   3'- -CUCGGU-CuuCGauuu--UCGGGaCgCGG- -5'
29028 3' -53.8 NC_006146.1 + 7716 0.68 0.902007
Target:  5'- aGGGgCAGAAGCc--AAGCCaCUGC-CCg -3'
miRNA:   3'- -CUCgGUCUUCGauuUUCGG-GACGcGG- -5'
29028 3' -53.8 NC_006146.1 + 7750 0.69 0.871921
Target:  5'- aGAGCUcaAGAAcCUGAGAaucugccuggucguGCUCUGCGCCc -3'
miRNA:   3'- -CUCGG--UCUUcGAUUUU--------------CGGGACGCGG- -5'
29028 3' -53.8 NC_006146.1 + 10918 0.68 0.881474
Target:  5'- aGGCCAGAccccaaCUGcgGGCuCCUGCGCg -3'
miRNA:   3'- cUCGGUCUuc----GAUuuUCG-GGACGCGg -5'
29028 3' -53.8 NC_006146.1 + 11990 0.71 0.770692
Target:  5'- -uGCCAGggGCagAAGAGCUCgcugacuccgGUGCCc -3'
miRNA:   3'- cuCGGUCuuCGa-UUUUCGGGa---------CGCGG- -5'
29028 3' -53.8 NC_006146.1 + 12386 0.72 0.731288
Target:  5'- aGAGUCAcGGGCUAcAGGCCCUGC-CUc -3'
miRNA:   3'- -CUCGGUcUUCGAUuUUCGGGACGcGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.