miRNA display CGI


Results 41 - 60 of 231 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29028 5' -56.5 NC_006146.1 + 151674 0.66 0.888225
Target:  5'- aGGGCGUugaGGAcggcaaACUCaCGUCcAgGCCCUg -3'
miRNA:   3'- aCCCGCG---UCU------UGAG-GUAGuUgCGGGG- -5'
29028 5' -56.5 NC_006146.1 + 130044 0.66 0.888225
Target:  5'- cGGaccGCGagcCGGGcCUCCAagAGCGCCCCc -3'
miRNA:   3'- aCC---CGC---GUCUuGAGGUagUUGCGGGG- -5'
29028 5' -56.5 NC_006146.1 + 170414 0.66 0.888225
Target:  5'- cGGGgGCGGAggggggGgUCCcgCGGgGCCCg -3'
miRNA:   3'- aCCCgCGUCU------UgAGGuaGUUgCGGGg -5'
29028 5' -56.5 NC_006146.1 + 23725 0.66 0.888225
Target:  5'- cGGGCGaaGGGGCgCCgGUCuGCGCCgCCg -3'
miRNA:   3'- aCCCGCg-UCUUGaGG-UAGuUGCGG-GG- -5'
29028 5' -56.5 NC_006146.1 + 168551 0.66 0.888225
Target:  5'- cGGGgGCGGAggggggGgUCCcgCGGgGCCCg -3'
miRNA:   3'- aCCCgCGUCU------UgAGGuaGUUgCGGGg -5'
29028 5' -56.5 NC_006146.1 + 50822 0.66 0.887549
Target:  5'- gGGGgGauccuugGGGGCUCCGUCuucccggcgcagcAGCGCCaCCa -3'
miRNA:   3'- aCCCgCg------UCUUGAGGUAG-------------UUGCGG-GG- -5'
29028 5' -56.5 NC_006146.1 + 3093 0.67 0.881371
Target:  5'- cGGGgGCGGGccacGCgcgCCcgCcACGCCCa -3'
miRNA:   3'- aCCCgCGUCU----UGa--GGuaGuUGCGGGg -5'
29028 5' -56.5 NC_006146.1 + 56646 0.67 0.881371
Target:  5'- -aGGUcCAGGGgUCCGUCGAuCGCCgCCg -3'
miRNA:   3'- acCCGcGUCUUgAGGUAGUU-GCGG-GG- -5'
29028 5' -56.5 NC_006146.1 + 49151 0.67 0.881371
Target:  5'- -aGGCGCAcGggUUCCAgggUCAGCcuguuGCCCg -3'
miRNA:   3'- acCCGCGU-CuuGAGGU---AGUUG-----CGGGg -5'
29028 5' -56.5 NC_006146.1 + 107792 0.67 0.881371
Target:  5'- gGGGCaccugcGCAGGGuCUCCuUCAGCgagGCCaCCg -3'
miRNA:   3'- aCCCG------CGUCUU-GAGGuAGUUG---CGG-GG- -5'
29028 5' -56.5 NC_006146.1 + 2161 0.67 0.881371
Target:  5'- cGGGgGCGGGccacGCgcgCCcgCcACGCCCa -3'
miRNA:   3'- aCCCgCGUCU----UGa--GGuaGuUGCGGGg -5'
29028 5' -56.5 NC_006146.1 + 1229 0.67 0.881371
Target:  5'- cGGGgGCGGGccacGCgcgCCcgCcACGCCCa -3'
miRNA:   3'- aCCCgCGUCU----UGa--GGuaGuUGCGGGg -5'
29028 5' -56.5 NC_006146.1 + 170540 0.67 0.881371
Target:  5'- gGGGCGCGGcGAUU--GUCGcCGCCCUc -3'
miRNA:   3'- aCCCGCGUC-UUGAggUAGUuGCGGGG- -5'
29028 5' -56.5 NC_006146.1 + 169609 0.67 0.881371
Target:  5'- gGGGCGCGGcGAUU--GUCGcCGCCCUc -3'
miRNA:   3'- aCCCGCGUC-UUGAggUAGUuGCGGGG- -5'
29028 5' -56.5 NC_006146.1 + 168676 0.67 0.881371
Target:  5'- gGGGCGCGGcGAUU--GUCGcCGCCCUc -3'
miRNA:   3'- aCCCGCGUC-UUGAggUAGUuGCGGGG- -5'
29028 5' -56.5 NC_006146.1 + 167744 0.67 0.881371
Target:  5'- gGGGCGCGGcGAUU--GUCGcCGCCCUc -3'
miRNA:   3'- aCCCGCGUC-UUGAggUAGUuGCGGGG- -5'
29028 5' -56.5 NC_006146.1 + 156742 0.67 0.881371
Target:  5'- -uGGCGCAGAcgcucaGCUCCAcggcCAGCGCguacaCCu -3'
miRNA:   3'- acCCGCGUCU------UGAGGUa---GUUGCGg----GG- -5'
29028 5' -56.5 NC_006146.1 + 47701 0.67 0.881371
Target:  5'- uUGGGCGUGGAAgaggUgGggagCAGCGCCCg -3'
miRNA:   3'- -ACCCGCGUCUUga--GgUa---GUUGCGGGg -5'
29028 5' -56.5 NC_006146.1 + 99623 0.67 0.881371
Target:  5'- cGaGGCGUAGAuGCUCCGgaggaaggCGuagaggcCGCCCCc -3'
miRNA:   3'- aC-CCGCGUCU-UGAGGUa-------GUu------GCGGGG- -5'
29028 5' -56.5 NC_006146.1 + 126538 0.67 0.880673
Target:  5'- cGGGCGgGGGuCUggcaccucguccCCAUCAGCcaccugugcagaaGCCCCc -3'
miRNA:   3'- aCCCGCgUCUuGA------------GGUAGUUG-------------CGGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.